PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009103567.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB | ||||||||
Protein Properties | Length: 395aa MW: 44435.2 Da PI: 4.7101 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.1 | 1.5e-16 | 30 | 77 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed+ll +v ++G g+W+++ + g+ R++k+c++rw ++l XP_009103567.1 30 KGPWTSAEDQLLTAYVDKHGEGNWNAVQKQSGLSRCGKSCRLRWVNHL 77 79*******************************************996 PP | |||||||
2 | Myb_DNA-binding | 41.1 | 4e-13 | 83 | 126 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g +T E++l +++++ +G++ W++ a+ ++ gRt++++k++w++ XP_009103567.1 83 KGGFTDKEEQLVIELHASMGNK-WARMAAQLP-GRTDNEIKNFWNT 126 6789******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.921 | 25 | 77 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.99E-28 | 28 | 124 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.8E-14 | 29 | 79 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-14 | 30 | 77 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-23 | 31 | 84 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.92E-10 | 32 | 77 | No hit | No description |
PROSITE profile | PS51294 | 22.517 | 78 | 132 | IPR017930 | Myb domain |
SMART | SM00717 | 1.5E-13 | 82 | 130 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.2E-12 | 83 | 126 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.6E-24 | 85 | 130 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.13E-9 | 86 | 128 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 395 aa Download sequence Send to blast |
MVDETITQMG KVLHDSESGQ NLALEKTFHK GPWTSAEDQL LTAYVDKHGE GNWNAVQKQS 60 GLSRCGKSCR LRWVNHLRPS LKKGGFTDKE EQLVIELHAS MGNKWARMAA QLPGRTDNEI 120 KNFWNTRLKK LQRLGLPIYP DEVREQAMNA AVQNGQNSDH SQESLEPDCL EIPEFDFKYL 180 QLNNYQSVLL RNVPMGNNMI XQYFFQPNNM YNLIGSPYMS PPKRKRVREP ETDFLDTGGY 240 AANEQSGQLW NYPFVESNAA KYSSPSEKLE LPSFQCCDPL GDWETQHSNP MLAVESDSTL 300 VESPLTDCPS SGLLESVVYG SSGEKQATNS TDPDSPLLLQ SSLFGHIELT PAFANNTETD 360 MVPFGPTSSS ERLTSSLESS DWIRQLLGED RDYTK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-27 | 30 | 130 | 7 | 106 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009103567.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KR076547 | 1e-166 | KR076547.1 Brassica napus MYB transcription factor 81-1 (MYB81-1.1) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018508834.1 | 0.0 | PREDICTED: LOW QUALITY PROTEIN: transcription factor MYB104 | ||||
TrEMBL | M4D6C9 | 0.0 | M4D6C9_BRARP; Uncharacterized protein | ||||
STRING | Bra012038.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9198 | 21 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26960.1 | 1e-139 | myb domain protein 81 |