PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009103446.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 188aa    MW: 21207.3 Da    PI: 5.0561
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009103446.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.27.2e-172473255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     ykG+r +k +g+WvAeIr+p   +kr r +lg+  t+e Aa+a++ a  +l+g
  XP_009103446.1 24 PYKGIRMRK-WGKWVAEIREP---NKRSRLWLGSSPTPEAAARAYDTAVFYLRG 73
                    59*****99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.2E-282482IPR001471AP2/ERF domain
PROSITE profilePS5103222.1022481IPR001471AP2/ERF domain
SMARTSM003804.9E-362487IPR001471AP2/ERF domain
PRINTSPR003675.0E-112536IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-192582IPR016177DNA-binding domain
PfamPF008471.3E-102573IPR001471AP2/ERF domain
CDDcd000183.27E-262583No hitNo description
PRINTSPR003675.0E-116383IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MEGGGGVANV AVSGTTTTRK RERPYKGIRM RKWGKWVAEI REPNKRSRLW LGSSPTPEAA  60
ARAYDTAVFY LRGPTARLNF PELLTGEKFT EEDMSAATIR KKATEVGAQV DALGSAVLDN  120
RHRVFGQDQE SCDDSKNFRR NYQNGDGEEH EDDDEDEKRL KSGGWLLERV DLNKLPDPES  180
SDEDWESK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-142581663ATERF1
3gcc_A7e-142581663ATERF1
5wx9_A9e-1425821573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009103446.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009103446.11e-137PREDICTED: ethylene-responsive transcription factor ERF010
SwissprotQ9FH941e-100ERF10_ARATH; Ethylene-responsive transcription factor ERF010
TrEMBLM4D6N11e-135M4D6N1_BRARP; Uncharacterized protein
STRINGBra012140.1-P1e-136(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67190.12e-95DREB and EAR motif protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]