PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009103332.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Nin-like

Protein Properties

Length: 775aa MW: 86886.9 Da PI: 5.5122

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009103332.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.8	2.5e-29	507	557	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 k+i+l++l++yF++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ XP_009103332.1 507 DKNITLDVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGIQRWPSRKIKKV 557 69***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.733	496	577	IPR003035	RWP-RK domain
Pfam	PF02042	1.2E-25	509	557	IPR003035	RWP-RK domain
SuperFamily	SSF54277	5.64E-22	668	761	No hit	No description
Gene3D	G3DSA:3.10.20.240	3.4E-21	674	753	No hit	No description
SMART	SM00666	4.1E-25	675	758	IPR000270	PB1 domain
PROSITE profile	PS51745	28.821	675	758	IPR000270	PB1 domain
CDD	cd06407	2.92E-42	676	756	No hit	No description
Pfam	PF00564	1.6E-18	676	757	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 775 aa Download sequence Send to blast
MEDSYLQTEN AVMDTGFMDG LLLDGCWLET TDGSDFLNLT SFNPSSFTWS PTQDTSALLS 60 HMYSQDYAER SSLEEFQWNK RWWIGPGGGA SSVTERLVQA VEHIKDYTTE RGSLIQLWVP 120 VSRGGKRVLT TKEQPFSHDP LCQRLANYRE ISVNYHFSAE QDDSKALAGL PGRVFLGKLP 180 EWTPDVRFFR SEEYPRVQHA QDCGVRGTLA IPVFEQGSKI CLGVIEVVMT TEMVKLRPEL 240 ESICRALQAV DLRSTEVPPI QPSLKGCDLS YKAALPEIQN LLRCACETHN LPLAQTWVSC 300 LQQTKTGCRH NDENYIHCIS TIDDACYVGD PTVLEFHEAC SEHHLLKGQG VAGQAFLTNG 360 PCFSPDVSNY KKSEYPLSHH ANMFGLHGAV AIRLRCVHTG SADFILEFFL PKECDDVEEQ 420 RKMLDALSSI MAHVPRSLRT VTDTELEEES EVIVTSKIEN TLVFDGGDEH NDVFGLKRGF 480 EYKSSESSMF FCDGFSSMAE KKRTKADKNI TLDVLRQYFA GSLKDAAKSI GVCPTTLKRI 540 CRQHGIQRWP SRKIKKVGHS LQKIKRVIDS VECVSGPLPI SSFYANFPNL ASREPSQQGK 600 TSPPLPQPLQ LSKSPVSTYS SSSSQCCSSG ATTDPSQGDV RTASSLDETV LTLSSLENNP 660 QGGTHLLSSS QDEDSLRIKV SYGEEKIRFR MRDSRRLTDL LWEIGKRFSI DDMSRYDLKY 720 LDEDNEWVLL TCDEDVEECV DVCRTTPSHT IMLLLHVSSH CFPERSSATG YSLWH

Sequence ? help Back to Top

Protein Sequence Length: 775 aa Download sequence Send to blast

MEDSYLQTEN AVMDTGFMDG LLLDGCWLET TDGSDFLNLT SFNPSSFTWS PTQDTSALLS  60
HMYSQDYAER SSLEEFQWNK RWWIGPGGGA SSVTERLVQA VEHIKDYTTE RGSLIQLWVP  120
VSRGGKRVLT TKEQPFSHDP LCQRLANYRE ISVNYHFSAE QDDSKALAGL PGRVFLGKLP  180
EWTPDVRFFR SEEYPRVQHA QDCGVRGTLA IPVFEQGSKI CLGVIEVVMT TEMVKLRPEL  240
ESICRALQAV DLRSTEVPPI QPSLKGCDLS YKAALPEIQN LLRCACETHN LPLAQTWVSC  300
LQQTKTGCRH NDENYIHCIS TIDDACYVGD PTVLEFHEAC SEHHLLKGQG VAGQAFLTNG  360
PCFSPDVSNY KKSEYPLSHH ANMFGLHGAV AIRLRCVHTG SADFILEFFL PKECDDVEEQ  420
RKMLDALSSI MAHVPRSLRT VTDTELEEES EVIVTSKIEN TLVFDGGDEH NDVFGLKRGF  480
EYKSSESSMF FCDGFSSMAE KKRTKADKNI TLDVLRQYFA GSLKDAAKSI GVCPTTLKRI  540
CRQHGIQRWP SRKIKKVGHS LQKIKRVIDS VECVSGPLPI SSFYANFPNL ASREPSQQGK  600
TSPPLPQPLQ LSKSPVSTYS SSSSQCCSSG ATTDPSQGDV RTASSLDETV LTLSSLENNP  660
QGGTHLLSSS QDEDSLRIKV SYGEEKIRFR MRDSRRLTDL LWEIGKRFSI DDMSRYDLKY  720
LDEDNEWVLL TCDEDVEECV DVCRTTPSHT IMLLLHVSSH CFPERSSATG YSLWH

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bra.18166	1e-116	root

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009103332.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY091015	0.0	AY091015.1 Arabidopsis thaliana putative nodule inception protein (At1g20640) mRNA, complete cds.
GenBank	AY117237	0.0	AY117237.1 Arabidopsis thaliana putative nodule inception protein (At1g20640) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009103332.1	0.0	PREDICTED: protein NLP4-like
Swissprot	Q9LE38	0.0	NLP4_ARATH; Protein NLP4
TrEMBL	M4D6Y1	0.0	M4D6Y1_BRARP; Uncharacterized protein
STRING	Bra012241.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3461	26	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	0.0	Nin-like family protein