PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009103230.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 162aa    MW: 18990.3 Da    PI: 10.6608
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009103230.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.51.2e-161150342
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                    i++ks r vtf kR++gilKK +EL +LC+ +++ ii+s 
  XP_009103230.1 11 ISDKSTRRVTFRKRKEGILKKINELTILCGLRACAIIYSD 50
                    99************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554553.01E-21185IPR002100Transcription factor, MADS-box
SMARTSM004321.6E-18160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.927150IPR002100Transcription factor, MADS-box
CDDcd002664.46E-21285No hitNo description
PRINTSPR004047.1E-8323IPR002100Transcription factor, MADS-box
PfamPF003193.2E-151151IPR002100Transcription factor, MADS-box
PRINTSPR004047.1E-82338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MGRRKVTHQL ISDKSTRRVT FRKRKEGILK KINELTILCG LRACAIIYSD YKEGPEVWPN  60
RREVRVLLNR FSALPKDKQT KYMMDQKDLM TRMIQDAKKK LEKEKMHSRA MELGTIAAFN  120
DLHDADHSED LIKAADVVEK RINVIRERIK ALESRVALVK RD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RRKVTHQLISDKSTRRVTFRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009103230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009103230.11e-115PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLM4D7751e-114M4D775_BRARP; Uncharacterized protein
STRINGBra012335.1-P1e-115(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22590.21e-84AGAMOUS-like 87