PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009103226.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB | ||||||||
Protein Properties | Length: 276aa MW: 31559.5 Da PI: 8.2085 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.6 | 7e-19 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+llvd+++++G g+W++ +r g+ R++k+c++rw +yl XP_009103226.1 14 KGAWTKEEDQLLVDYIRKHGEGCWRSLPRAAGLQRCGKSCRLRWMNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 59.1 | 9.5e-19 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eEdel+++++ ++G++ W++Ia +++ gRt++++k++w+++ XP_009103226.1 67 RGNFTEEEDELIIKLHSLFGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.0E-25 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.153 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.26E-31 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.6E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.54E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 29.315 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.7E-29 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.6E-18 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.1E-17 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.64E-13 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MGRSPCCEKA HMNKGAWTKE EDQLLVDYIR KHGEGCWRSL PRAAGLQRCG KSCRLRWMNY 60 LRPDLKRGNF TEEEDELIIK LHSLFGNKWS LIAGRLPGRT DNEIKNYWNT HIKRKLLSRG 120 IDPNTHRSIN GSATPPSKTT TPSLQNDEPV RFDFSGPDQQ RTVKPEPMLL DREETNNNNI 180 NNCTSSGTTS EKDIQTDDDW VLNLELSVGP ATTKSYRYEL TRKANPDLAE STRRWSFELL 240 GAQAEVCLCC RIGSHNESCR NCRTSDVLTT WESKIL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-29 | 12 | 116 | 5 | 108 | B-MYB |
1h8a_C | 2e-29 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:9839469}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00053 | PBM | Transfer from AT1G22640 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009103226.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18541146, ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC966736 | 0.0 | KC966736.1 Brassica napus MYB transcription factor 3 (MYB3.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001302680.1 | 0.0 | transcription factor MYB3 | ||||
Refseq | XP_009103226.1 | 0.0 | PREDICTED: transcription factor MYB3-like | ||||
Swissprot | Q9S9K9 | 1e-140 | MYB3_ARATH; Transcription factor MYB3 | ||||
TrEMBL | A0A0A7BX13 | 0.0 | A0A0A7BX13_BRANA; MYB transcription factor 3 | ||||
TrEMBL | A0A397YJN8 | 0.0 | A0A397YJN8_BRACM; Uncharacterized protein | ||||
TrEMBL | M4D777 | 0.0 | M4D777_BRARP; Uncharacterized protein | ||||
STRING | Bra012337.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 1e-129 | myb domain protein 3 |