PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009103019.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 193aa    MW: 23002.8 Da    PI: 9.6868
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009103019.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.83.1e-121036127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                    ++ e C+f+++tG C +G+rC+F+H++
  XP_009103019.1 10 PGKEDCSFYLKTGRCDFGERCRFNHPK 36
                    5789*********************96 PP
2zf-CCCH24.45.2e-084767627
                    -SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  6 CrffartGtCkyGdrCkFaHgp 27
                    C+ f+ +G CkyG++CkF H++
  XP_009103019.1 47 CK-FFLGGKCKYGSTCKFKHSK 67
                    88.6667*************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.4E-5936IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.939937IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-61137IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-91136IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-61537IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.0144168IPR000571Zinc finger, CCCH-type
SMARTSM003566.4E-44267IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-64366IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-54768IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-54767IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MRDDEYPVRP GKEDCSFYLK TGRCDFGERC RFNHPKELPK ELSLQKCKFF LGGKCKYGST  60
CKFKHSKEGD STEAMRQDQK RQRTESSYGP SQEKRAKTID KQRREAQNNL QEERLMIPEN  120
RNVNAQEQAE MERQNREAQE KAQEERRRQI DNERRQARLR LERMKPRVLT SNVDQLREAL  180
RDIGIERKEG DGF
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009103019.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009103019.11e-139PREDICTED: putative zinc finger CCCH domain-containing protein 9
TrEMBLM4EMY01e-120M4EMY0_BRARP; Uncharacterized protein
STRINGBra030150.1-P1e-121(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14832817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-19C3H family protein