PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009102919.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Dof
Protein Properties Length: 322aa    MW: 34789.8 Da    PI: 10.0282
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009102919.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof121.13.9e-3842102262
          zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                     ++ +lkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGg+ rknk+++
  XP_009102919.1  42 QQPQLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGSYRKNKRVK 102
                     67899*****************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027013.5E-3345100IPR003851Zinc finger, Dof-type
ProDomPD0074786.0E-2746100IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.90146100IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104884IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MFGNCDQKKK MPSISSPNTN PLAIMQSKNM IVAPSHQQQQ QQQPQLKCPR CDSSNTKFCY  60
YNNYSLSQPR HFCKACKRYW TRGGTLRNVP VGGSYRKNKR VKRPATAAST VSKTTSSSPN  120
HQISHFSSMN HHPMLYGLSD HVSSCNSLPM IPSRFNDSSK TSSSGLESEF FSSGFSGLGA  180
LGLGFPHHMS HDHTAINGGF INNSTANKPF LLSGLFGSSV SSSSSSHLQH PHKPMNNGGE  240
MMGQSHLQTL ASLQDLHVGG NNEDVNKLGK LGQISGTISG FMSPSSLDPS NSNNIWNNAS  300
VVNGGWLDPT NNNVGSSLTS LI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.291654e-88leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009102919.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3530650.0AK353065.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-20-D16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009102919.10.0PREDICTED: dof zinc finger protein DOF1.4-like
SwissprotQ9FZA41e-142DOF14_ARATH; Dof zinc finger protein DOF1.4
TrEMBLM4EMR90.0M4EMR9_BRARP; Uncharacterized protein
STRINGBra030089.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47092650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28310.21e-124Dof family protein