PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009102912.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ERF | ||||||||
Protein Properties | Length: 168aa MW: 18719 Da PI: 9.9734 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65 | 1.5e-20 | 22 | 73 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++y+GVr ++ +gr++AeIrdp++ ++r++lg+f+t+e Aa+a+++a+++++g+ XP_009102912.1 22 TRYRGVRKRP-WGRYAAEIRDPYK---KTRVWLGTFDTPEAAARAYDRAALRFRGA 73 68********.**********765...6*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.88E-22 | 22 | 82 | No hit | No description |
Pfam | PF00847 | 8.1E-14 | 22 | 72 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-23 | 23 | 81 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.5E-35 | 23 | 86 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.632 | 23 | 80 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-31 | 23 | 81 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.1E-11 | 24 | 35 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.1E-11 | 46 | 62 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MAPTVKTAVV NTNGGDGGIK ETRYRGVRKR PWGRYAAEIR DPYKKTRVWL GTFDTPEAAA 60 RAYDRAALRF RGAKAKTNFP YTYMVDNNES PTQSSTVESS SIPDLNLGSV GSKFPFPKVQ 120 VKPGMILFDE ESTRSESDSS SVVMDRSPDR RSRVLLDLDL NLPPKPED |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 9e-23 | 13 | 83 | 3 | 75 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bra.1037 | 0.0 | bud| flower| leaf| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009102912.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009102912.1 | 1e-120 | PREDICTED: ethylene-responsive transcription factor 11-like | ||||
Swissprot | Q9C5I3 | 2e-57 | ERF76_ARATH; Ethylene-responsive transcription factor 11 | ||||
TrEMBL | A0A397YN84 | 1e-118 | A0A397YN84_BRACM; Uncharacterized protein | ||||
TrEMBL | M4EMS5 | 1e-118 | M4EMS5_BRARP; Uncharacterized protein | ||||
STRING | Bra030095.1-P | 1e-119 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28370.1 | 1e-41 | ERF domain protein 11 |
Publications ? help Back to Top | |||
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