PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009102844.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 402aa    MW: 46388.9 Da    PI: 6.8834
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009102844.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.24.4e-0682106327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      + C +++++G C +G +C+++H+p
  XP_009102844.1  82 VADCYYYLKNGGCFFGRSCRYNHPP 106
                     689********************97 PP
2zf-CCCH22.71.8e-07125147527
                     --SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                     +C  ++ tG+C yG+rC F+H+p
  XP_009102844.1 125 NCEQYLHTGQCTYGSRCWFNHPP 147
                     7********************96 PP
3zf-CCCH31.62.9e-10151174326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                      + C  +++tG+C+yG rC+F+H+
  XP_009102844.1 151 ARDCEQYLQTGQCSYGRRCRFNHP 174
                     589********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.91579107IPR000571Zinc finger, CCCH-type
SMARTSM003569.3E-479106IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.11E-582105IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-5113145IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.211120147IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-4120147IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-5125147IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.544148176IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-5148175IPR000571Zinc finger, CCCH-type
PfamPF006427.6E-8151174IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5152178IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-5154173IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MSDREDSEME IEEAKKNDPR RESTSMEETE GQDTDLRTRE ADDRTDWRHK RDPRSSAEKR  60
DNATQMRHEL GQSSEYPVRT GVADCYYYLK NGGCFFGRSC RYNHPPLGDD TVQPSAYKVR  120
LGATNCEQYL HTGQCTYGSR CWFNHPPLPG ARDCEQYLQT GQCSYGRRCR FNHPLTHLAP  180
YFQKGGCKHG SSFQFTNSMR GDGIEPMRQA TTWGRRSDER RHETESSSRA EKRARTIPDY  240
PSVIQDVSDE VGAGQNSWLQ RRRAQRGKID CGQRRVSEEE RTLRETVPCT VLVLYSQERQ  300
THDLEEQKQR ERVYENLRID QIKASVQSDG GIQTEQRLEI PENHSVNAQE NLQEQADVEK  360
EKRKAQEKAQ EERSRSLTGN VDQLIQSLQD NIGIGRKKGD GV
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009102844.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009102844.10.0PREDICTED: putative zinc finger CCCH domain-containing protein 9 isoform X2
TrEMBLA0A3P6B9D00.0A0A3P6B9D0_BRACM; Uncharacterized protein
STRINGBo7g045340.11e-173(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16540.22e-21zinc finger nuclease 3