PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009102843.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 405aa    MW: 46787.3 Da    PI: 7.0552
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009102843.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.24.5e-0682106327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      + C +++++G C +G +C+++H+p
  XP_009102843.1  82 VADCYYYLKNGGCFFGRSCRYNHPP 106
                     689********************97 PP
2zf-CCCH22.71.8e-07128150527
                     --SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                     +C  ++ tG+C yG+rC F+H+p
  XP_009102843.1 128 NCEQYLHTGQCTYGSRCWFNHPP 150
                     7********************96 PP
3zf-CCCH31.52.9e-10154177326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                      + C  +++tG+C+yG rC+F+H+
  XP_009102843.1 154 ARDCEQYLQTGQCSYGRRCRFNHP 177
                     589********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.16979107IPR000571Zinc finger, CCCH-type
SMARTSM003569.3E-479106IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-582106IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-5116148IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.211123150IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-4123150IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-5128150IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.544151179IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-5151178IPR000571Zinc finger, CCCH-type
PfamPF006427.7E-8154177IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5155181IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-5157176IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MSDREDSEME IEEAKKNDPR RESTSMEETE GQDTDLRTRE ADDRTDWRHK RDPRSSAEKR  60
DNATQMRHEL GQSSEYPVRT GVADCYYYLK NGGCFFGRSC RYNHPPRNQL GDDTVQPSAY  120
KVRLGATNCE QYLHTGQCTY GSRCWFNHPP LPGARDCEQY LQTGQCSYGR RCRFNHPLTH  180
LAPYFQKGGC KHGSSFQFTN SMRGDGIEPM RQATTWGRRS DERRHETESS SRAEKRARTI  240
PDYPSVIQDV SDEVGAGQNS WLQRRRAQRG KIDCGQRRVS EEERTLRETV PCTVLVLYSQ  300
ERQTHDLEEQ KQRERVYENL RIDQIKASVQ SDGGIQTEQR LEIPENHSVN AQENLQEQAD  360
VEKEKRKAQE KAQEERSRSL TGNVDQLIQS LQDNIGIGRK KGDGV
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009102843.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009102843.10.0PREDICTED: putative zinc finger CCCH domain-containing protein 9 isoform X1
TrEMBLA0A3P6B9D00.0A0A3P6B9D0_BRACM; Uncharacterized protein
STRINGBo7g045340.11e-173(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14832817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16540.21e-22zinc finger nuclease 3