PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009102840.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 341aa    MW: 39472.5 Da    PI: 8.3851
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009102840.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH322e-1081105327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      e C ++++ G C yG +C+F+H+p
  XP_009102840.1  81 VEDCYYYMKKGRCGYGLSCRFNHPP 105
                     699********************97 PP
2zf-CCCH331e-10149171527
                     --SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                      C  +++tG C+yG++C+F+H+p
  XP_009102840.1 149 DCIQYLQTGKCSYGPKCRFNHPP 171
                     5********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.00978106IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-578105IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-579104IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-781105IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.8E-484103IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.835144172IPR000571Zinc finger, CCCH-type
SMARTSM003560.017146171IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-5149172IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-8149171IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-5150170IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.535173193IPR000571Zinc finger, CCCH-type
SMARTSM0035675173192IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MSDRENPEKG DEEAKETDTR TESTSMGETE GRDPDSGPSE ANVRTNRRHE RYARSGAEKR  60
ENEPERHGLG DSSEYPVRIG VEDCYYYMKK GRCGYGLSCR FNHPPLPQRD QMRHDMVQPS  120
RYPVRPQLPE RSQMRHDMVQ TSPYPGAGDC IQYLQTGKCS YGPKCRFNHP PSPFFQKGDC  180
KNGSGCKFTH SMSGDGAEAE PMRQDTSWGK KRHAAKSSSR PWKRERQAHD LEERKQKKRR  240
VENLRIDPNV QSGEGGSQTE QRLEVPENRN VNAQEQADME RQNREAQEKA QEERRPRIDN  300
ERRQARLRLE RMQPRVLTNN VDQLREALPD IGIERKEGDG F
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009102840.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009102838.10.0PREDICTED: zinc finger CCCH domain-containing protein 42-like
TrEMBLM4EMX90.0M4EMX9_BRARP; Uncharacterized protein
STRINGBra030149.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.23e-16C3H family protein