PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009102838.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 384aa    MW: 44418.2 Da    PI: 8.6405
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009102838.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.82.4e-1081105327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      e C ++++ G C yG +C+F+H+p
  XP_009102838.1  81 VEDCYYYMKKGRCGYGLSCRFNHPP 105
                     699********************97 PP
2zf-CCCH32.81.2e-10149171527
                     --SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                      C  +++tG C+yG++C+F+H+p
  XP_009102838.1 149 DCIQYLQTGKCSYGPKCRFNHPP 171
                     5********************97 PP
3zf-CCCH33.76e-11180202527
                     --SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                      Cr +++tG+C+yG++C+++H+p
  XP_009102838.1 180 DCRQYLQTGQCSYGPKCRYNHPP 202
                     5********************97 PP
4zf-CCCH21.73.6e-07212234326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                     + +C+ff++ G Ck G+ CkF H+
  XP_009102838.1 212 RQICKFFQK-GDCKNGSGCKFTHS 234
                     579******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.00978106IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-578105IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-579104IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-781105IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.100.00184103IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.835144172IPR000571Zinc finger, CCCH-type
SMARTSM003560.017146171IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5149172IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-8149171IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-5150170IPR000571Zinc finger, CCCH-type
SMARTSM003568.9E-6175202IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.652175203IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5180203IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-8180202IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-5181201IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.84209236IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.2E-6211234IPR000571Zinc finger, CCCH-type
SMARTSM003560.0064211235IPR000571Zinc finger, CCCH-type
PfamPF006428.4E-5212234IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-5213235IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MSDRENPEKG DEEAKETDTR TESTSMGETE GRDPDSGPSE ANVRTNRRHE RYARSGAEKR  60
ENEPERHGLG DSSEYPVRIG VEDCYYYMKK GRCGYGLSCR FNHPPLPQRD QMRHDMVQPS  120
RYPVRPQLPE RSQMRHDMVQ TSPYPGAGDC IQYLQTGKCS YGPKCRFNHP PSPRDIGAID  180
CRQYLQTGQC SYGPKCRYNH PPSPVLPQWV SRQICKFFQK GDCKNGSGCK FTHSMSGDGA  240
EAEPMRQDTS WGKKRHAAKS SSRPWKRERQ AHDLEERKQK KRRVENLRID PNVQSGEGGS  300
QTEQRLEVPE NRNVNAQEQA DMERQNREAQ EKAQEERRPR IDNERRQARL RLERMQPRVL  360
TNNVDQLREA LPDIGIERKE GDGF
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009102838.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009102838.10.0PREDICTED: zinc finger CCCH domain-containing protein 42-like
TrEMBLA0A3P6B1E90.0A0A3P6B1E9_BRACM; Uncharacterized protein
STRINGBra030149.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14832817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-20floral homeotic protein (HUA1)