PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009102796.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 227aa MW: 24801.9 Da PI: 4.3645 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 18.1 | 4.8e-06 | 175 | 211 | 13 | 54 |
HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R+++++ + Lr+++P + ++ a+iL +Av+Y+ksL XP_009102796.1 175 RRKMKKMMGVLRRIVPGG-----EEMNTASILDEAVQYLKSL 211 899*************95.....69***************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.433 | 162 | 211 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0017 | 169 | 217 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.9E-7 | 175 | 218 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.27E-8 | 175 | 221 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.60E-6 | 175 | 216 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MQNNQYPYFS DQMGDGNMNS VPYASASSFD DLFPPCAKLP FHGVELQPSS VCPKNFVVFD 60 QTYDRSQVMF HPELTPRLVN SGLASSFQNE YVAGGYGNYG QQEVSSSSSH QEDPNEIDAL 120 LSTDEDDDDD ESEDGGDSEE VSSTARNSSS GYNSSRRKQS VSGSASSSNN DGKGRRKMKK 180 MMGVLRRIVP GGEEMNTASI LDEAVQYLKS LKLEAQKLGV GHFSNQS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 155 | 178 | RRKQSVSGSASSSNNDGKGRRKMK |
2 | 173 | 181 | GRRKMKKMM |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bra.21412 | 8e-64 | bud| flower| leaf| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009102796.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353252 | 4e-88 | AK353252.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-23-J23. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009102797.2 | 1e-167 | PREDICTED: transcription factor bHLH144-like | ||||
Refseq | XP_018508835.1 | 1e-167 | PREDICTED: transcription factor bHLH144-like | ||||
Swissprot | Q9ASX9 | 3e-97 | BH144_ARATH; Transcription factor bHLH144 | ||||
TrEMBL | A0A397YJ46 | 1e-166 | A0A397YJ46_BRACM; Uncharacterized protein | ||||
TrEMBL | M4EN14 | 1e-166 | M4EN14_BRARP; Uncharacterized protein | ||||
STRING | Bra030184.1-P | 1e-166 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6195 | 16 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29950.2 | 2e-61 | bHLH family protein |
Publications ? help Back to Top | |||
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