PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009102649.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 138aa    MW: 15428.8 Da    PI: 5.0145
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009102649.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22e-181263256
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                    +y+GVr ++ +g+++AeIrd  +    +r++lg+f t e+Aa+a+++a+ +++g+
  XP_009102649.1 12 KYRGVRKRP-WGKYAAEIRDSANH--GARVWLGTFNTGEDAARAYDRAAFSMRGH 63
                    8********.**********5333..3**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.77E-221272IPR016177DNA-binding domain
CDDcd000182.65E-171271No hitNo description
PROSITE profilePS5103223.1961270IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-311272IPR001471AP2/ERF domain
SMARTSM003802.6E-341276IPR001471AP2/ERF domain
PfamPF008472.5E-141263IPR001471AP2/ERF domain
PRINTSPR003675.3E-111324IPR001471AP2/ERF domain
PRINTSPR003675.3E-113652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MEHRASNTNQ VKYRGVRKRP WGKYAAEIRD SANHGARVWL GTFNTGEDAA RAYDRAAFSM  60
RGHKAILNFP HEYPMMRDGP SGGGENAVAS SSSEFSERDG GGGKEVIEFE YLDDSLLEEL  120
LECGESYNQD VWYNATVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-361211614114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00373DAPTransfer from AT3G23220Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009102649.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009102649.11e-100PREDICTED: ethylene-responsive transcription factor ERF095
SwissprotQ9LTC62e-42ERF95_ARATH; Ethylene-responsive transcription factor ERF095
TrEMBLA0A3P6BKI41e-98A0A3P6BKI4_BRACM; Uncharacterized protein
TrEMBLM4DEK21e-98M4DEK2_BRARP; Uncharacterized protein
STRINGBra014924.1-P2e-99(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23220.12e-41ERF family protein
Publications ? help Back to Top
  1. Quan R, et al.
    EIN3 and SOS2 synergistically modulate plant salt tolerance.
    Sci Rep, 2017. 7: p. 44637
    [PMID:28300216]