PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009102648.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 139aa    MW: 15959.5 Da    PI: 9.3889
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009102648.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.54.4e-201970256
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                    +++GVr+++ +g+++AeIrdps ng  +r +lg+f tae+Aa+a+++a+ +l+g+
  XP_009102648.1 19 RFRGVRRRP-WGKFAAEIRDPSRNG--ARLWLGTFETAEDAARAYDRAAFNLRGH 70
                    69*******.**********98887..**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.01E-171878No hitNo description
SuperFamilySSF541712.03E-231978IPR016177DNA-binding domain
PROSITE profilePS5103224.5131977IPR001471AP2/ERF domain
PfamPF008474.1E-141970IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-311979IPR001471AP2/ERF domain
SMARTSM003801.1E-361983IPR001471AP2/ERF domain
PRINTSPR003676.5E-112031IPR001471AP2/ERF domain
PRINTSPR003676.5E-114359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MEGPNRRSNS QPQDDKQARF RGVRRRPWGK FAAEIRDPSR NGARLWLGTF ETAEDAARAY  60
DRAAFNLRGH LAILNFPNEY YSRMDDYALR PPYSSSSSSS SGSTSTGVSR QNQREVFEFE  120
YLDGRVLEEL LDSEEGKKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-311612611114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009102648.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009102648.11e-97PREDICTED: ethylene-responsive transcription factor ERF098-like
RefseqXP_013651499.11e-97ethylene-responsive transcription factor ERF098-like
RefseqXP_013651501.11e-97ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC53e-70ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A397YI162e-96A0A397YI16_BRACM; Uncharacterized protein
TrEMBLM4DEK32e-96M4DEK3_BRARP; Uncharacterized protein
STRINGBra014925.1-P4e-97(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.11e-58ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]