PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009102628.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 334aa    MW: 37381.5 Da    PI: 9.8661
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009102628.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_124.27.3e-082032401754
                     HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1  17 ArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 
                     A+rsR RK+++i eLe+ v++L+ae ++   el+ l++
  XP_009102628.1 203 AQRSRVRKLQYISELERNVQTLQAEGSKVSAELDFLNQ 240
                     89*************************99999998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003380.0073192251IPR004827Basic-leucine zipper domain
CDDcd147031.30E-14195242No hitNo description
Gene3DG3DSA:1.20.5.1709.8E-8203244No hitNo description
SuperFamilySSF579597.74E-6203245No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MAGTKGSESV RSLMNPGKNA LLPPKIPFPS GLMGSRHGHK VSVEKAHQRT SSESHLVEEE  60
LPFWLDDLLN EPESPSRKSG HRRSASDSYA YLDAANAATT ISDFSYRNPV SSIQRGIQEL  120
DPSQDASFYA DGSFLKQRNR PSGARPSWTR ESVGGGKHMG ASSYISQDAT AETKRLSSEE  180
NNSNPQPGAY EADNTKRAKQ QFAQRSRVRK LQYISELERN VQTLQAEGSK VSAELDFLNQ  240
RNLILSLENK ALKHRLESIA QEKLIKQLEQ EVLEREIGRL RALYQQQQHT RQQSASHKRA  300
SSKDLDSQFS TLSLNAKDSN CRRDSLSVMG QLHF
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009102628.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009102628.10.0PREDICTED: uncharacterized protein At4g06598-like
SwissprotQ8W3M71e-43Y4598_ARATH; Uncharacterized protein At4g06598
TrEMBLA0A078GFA60.0A0A078GFA6_BRANA; BnaA01g21580D protein
STRINGBo1g087780.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33602444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58110.21e-160bZIP family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]