PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009102592.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 327aa    MW: 35929.1 Da    PI: 5.8524
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009102592.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.24.1e-10163210455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L++l+P +    ++   Ka +L + ++Y++sLq
  XP_009102592.1 163 SHSLAERARREKISERMTLLQDLVPGC----NRITGKAVMLDEIINYVQSLQ 210
                     8**************************....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.18E-14157221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.78E-10157212No hitNo description
Gene3DG3DSA:4.10.280.102.7E-15159217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.542159209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-7163210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.2E-8165215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MENQREESIK YVALGQSDDP FGNEGTIGDL LVGRFCNPQE PISPYPPGIL RFPPYPGQFG  60
SQDSNKSSLL DPDLDRVQTA KPNSRKRKLI PSASASASGG NGKDSPASSS LTASNSKVSG  120
EIVGSKRSKQ DEAGSSNKDD AKPPEPPKDY IHVRARRGQA TDSHSLAERA RREKISERMT  180
LLQDLVPGCN RITGKAVMLD EIINYVQSLQ RQFLSMKLAT INPRMEFNPS AALSTEMVQP  240
GEALTQSLYS MACSEQRLPS AYYSLAKNMP RFSDTQFHST DAFVQAETQG FWENDLQSIV  300
QMGFGDVQQQ SNNNSCSEPT LQMKLEP
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009102592.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0654411e-143AY065441.1 Arabidopsis thaliana putative DNA-binding protein (At3g23690) mRNA, complete cds.
GenBankAY0965361e-143AY096536.1 Arabidopsis thaliana putative DNA-binding protein (At3g23690) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009102592.10.0PREDICTED: transcription factor bHLH77 isoform X2
SwissprotQ9LK481e-169BH077_ARATH; Transcription factor bHLH77
TrEMBLM4DEQ00.0M4DEQ0_BRARP; Uncharacterized protein
STRINGBra014972.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23690.11e-147bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]