PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009102502.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 309aa    MW: 35247.6 Da    PI: 5.7688
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009102502.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.62.7e-35171092103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     F+ k+y++++d++++ li+w    nsf+v+d+ +f++++Lp yFkh+nf+SFvRQLn+YgF+kv+ ++         weF++++F +g+k+ll++
  XP_009102502.1  17 FVVKTYQMVNDPSTDWLITWGPAHNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEHFLRGQKHLLKN 102
                     9********************999*****************************************999.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i r+k++
  XP_009102502.1 103 IARRKHA 109
                     ****975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.4E-5513106IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.4E-3714106IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.01E-3314106IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.4E-181740IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.3E-3017106IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-185567IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405680IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-186880IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006970Biological Processresponse to osmotic stress
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MEDDNNNNTN TNVIAPFVVK TYQMVNDPST DWLITWGPAH NSFIVVDPLD FSQRILPAYF  60
KHNNFSSFVR QLNTYGFRKV DPDRWEFANE HFLRGQKHLL KNIARRKHAR GMMDVEDGEI  120
VKEIERLRDE QRELELEIQR MNQRIEATEK RPEQMMAFLY KVVDDPDLLP RMMLEKERLV  180
SDKKKRRVTV KSEDEEENGR VFGIISPTPS PPENLYRTQS PENSMGWVVP MQKPGNFGSY  240
NETGLISTSS TSSSLTSTLS LPESVNGGGG GCGSIQGETR YKEAATFGGV VESNPQTPPY  300
PFSLFRGGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-261410626129Heat shock factor protein 1
5d5v_B7e-261410626129Heat shock factor protein 1
5d5v_D7e-261410626129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1182186KKKRR
2182187KKKRRV
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009102502.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0561111e-149AY056111.1 Arabidopsis thaliana AT3g24520/MOB24_5 mRNA, complete cds.
GenBankAY0726141e-149AY072614.1 Arabidopsis thaliana AT3g24520/MOB24_5 mRNA, complete cds.
GenBankHQ3223821e-149HQ322382.1 Arabidopsis thaliana heat shock factor (HSF) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009102502.10.0PREDICTED: heat stress transcription factor C-1
SwissprotQ9LV521e-150HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLM4DEX80.0M4DEX8_BRARP; Uncharacterized protein
STRINGBra015050.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67752743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.11e-136heat shock transcription factor C1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]