PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009101950.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Nin-like

Protein Properties

Length: 721aa MW: 81013.8 Da PI: 7.9006

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009101950.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	88.9	4.3e-28	465	515	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+i+l+ l+++F++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ XP_009101950.1 465 EKDITLDILRQHFAGSLKDAAKNIGVCPTTLKRICRQHGISRWPSRKIKKV 515 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.041	451	535	IPR003035	RWP-RK domain
Pfam	PF02042	3.8E-25	468	515	IPR003035	RWP-RK domain
Gene3D	G3DSA:3.10.20.240	1.2E-17	631	717	No hit	No description
SMART	SM00666	2.6E-19	633	720	IPR000270	PB1 domain
PROSITE profile	PS51745	21.308	633	720	IPR000270	PB1 domain
CDD	cd06407	1.03E-33	634	717	No hit	No description
SuperFamily	SSF54277	1.04E-17	634	718	No hit	No description
Pfam	PF00564	9.5E-15	635	718	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006107	Biological Process	oxaloacetate metabolic process
GO:0006108	Biological Process	malate metabolic process
GO:0005515	Molecular Function	protein binding
GO:0050152	Molecular Function	omega-amidase activity

Sequence ? help Back to Top
Protein Sequence Length: 721 aa Download sequence Send to blast
MLASISSLAL TQSWLTNFIC RSLVHHILVN YLYFVCKYRG MLMQMEESNN SGVVDFPENF 60 MDQLLWEECR GEEEEVSLWS SLGLKERVTC AMGHLQEVMG GEKELLIQLW VPVERGMRRV 120 LSTEEQPYSL NLFSQSQSLA LYRDISAGYS FAAEVGSDQL VGLPGRVFLN RMPEWTPDVR 180 FFRSEEYLRI GYAHRCQVRA SLALPLFQGP SGTCMGVLEM ITTHPSLEYG SQLHTIHHAL 240 QAFDLRSSET SIVPTSLKPH TDDDLHREVA SILKGICISY GLPLAITWGH QQDSCLSAIV 300 SASYASDQNS RSFLDACSEH HLVAKEGIAG RAFATKKQYI AKDVAILSYP LSHYAKMFDL 360 HAALAIPLLT RYSRNVQFVL EFFFPRDYYC LINQRPILLA SQLSLRFQSS PHLMVDDDQL 420 KLAECMSRKG KGKDVSVSWE MREPSSFSSS SSSCLESRKR KRRDEKDITL DILRQHFAGS 480 LKDAAKNIGV CPTTLKRICR QHGISRWPSR KIKKVGHSLR KLQVVMDSVE GVQGSHHLAS 540 FYSSFPQLQS PLQLDPTKTV AKSPPPSSSS SSGSSTCCSS EEKDKQLGGG FHKPSSQVLL 600 TLGSSLMKDE QRPVRATSSL PPLPSARKAK DAGMKVHAMF GDSKMRMRLK HHWGIADLRR 660 EIAKGFGMDD DALTSNFTLK YMDDDEEWVL LTCDADLEEC IQIYKSSLYK ETVRISVSSL 720 L

Sequence ? help Back to Top

Protein Sequence Length: 721 aa Download sequence Send to blast

MLASISSLAL TQSWLTNFIC RSLVHHILVN YLYFVCKYRG MLMQMEESNN SGVVDFPENF  60
MDQLLWEECR GEEEEVSLWS SLGLKERVTC AMGHLQEVMG GEKELLIQLW VPVERGMRRV  120
LSTEEQPYSL NLFSQSQSLA LYRDISAGYS FAAEVGSDQL VGLPGRVFLN RMPEWTPDVR  180
FFRSEEYLRI GYAHRCQVRA SLALPLFQGP SGTCMGVLEM ITTHPSLEYG SQLHTIHHAL  240
QAFDLRSSET SIVPTSLKPH TDDDLHREVA SILKGICISY GLPLAITWGH QQDSCLSAIV  300
SASYASDQNS RSFLDACSEH HLVAKEGIAG RAFATKKQYI AKDVAILSYP LSHYAKMFDL  360
HAALAIPLLT RYSRNVQFVL EFFFPRDYYC LINQRPILLA SQLSLRFQSS PHLMVDDDQL  420
KLAECMSRKG KGKDVSVSWE MREPSSFSSS SSSCLESRKR KRRDEKDITL DILRQHFAGS  480
LKDAAKNIGV CPTTLKRICR QHGISRWPSR KIKKVGHSLR KLQVVMDSVE GVQGSHHLAS  540
FYSSFPQLQS PLQLDPTKTV AKSPPPSSSS SSGSSTCCSS EEKDKQLGGG FHKPSSQVLL  600
TLGSSLMKDE QRPVRATSSL PPLPSARKAK DAGMKVHAMF GDSKMRMRLK HHWGIADLRR  660
EIAKGFGMDD DALTSNFTLK YMDDDEEWVL LTCDADLEEC IQIYKSSLYK ETVRISVSSL  720
L

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	457	462	RKRKRR

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009101950.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrate. {ECO:0000269\|PubMed:15375205}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009101950.1	0.0	PREDICTED: protein NLP3 isoform X2
Swissprot	Q9SVF1	0.0	NLP3_ARATH; Protein NLP3
TrEMBL	A0A078IZE0	0.0	A0A078IZE0_BRANA; BnaA06g40940D protein
TrEMBL	M4EXM4	0.0	M4EXM4_BRARP; Uncharacterized protein
STRING	Bra033561.1-P	0.0	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38340.1	0.0	Nin-like family protein

Publications ? help Back to Top
Doidy J, et al. "Hit-and-Run" transcription: de novo transcription initiated by a transient bZIP1 "hit" persists after the "run". BMC Genomics, 2016. 17: p. 92 [PMID:26843062]