PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009101949.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Nin-like

Protein Properties

Length: 730aa MW: 82021 Da PI: 7.9006

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009101949.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	88.8	4.3e-28	474	524	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+i+l+ l+++F++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ XP_009101949.1 474 EKDITLDILRQHFAGSLKDAAKNIGVCPTTLKRICRQHGISRWPSRKIKKV 524 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.041	460	544	IPR003035	RWP-RK domain
Pfam	PF02042	3.9E-25	477	524	IPR003035	RWP-RK domain
Gene3D	G3DSA:3.10.20.240	1.2E-17	640	726	No hit	No description
PROSITE profile	PS51745	21.308	642	729	IPR000270	PB1 domain
SMART	SM00666	2.6E-19	642	729	IPR000270	PB1 domain
CDD	cd06407	6.63E-34	643	726	No hit	No description
SuperFamily	SSF54277	1.04E-17	643	727	No hit	No description
Pfam	PF00564	9.7E-15	644	727	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006107	Biological Process	oxaloacetate metabolic process
GO:0006108	Biological Process	malate metabolic process
GO:0005515	Molecular Function	protein binding
GO:0050152	Molecular Function	omega-amidase activity

Sequence ? help Back to Top
Protein Sequence Length: 730 aa Download sequence Send to blast
MLASISSLAL TQSWLTNFIC RSLVHHILVN YLYFVCKYRG MLMQMEESNN SGVVDFPENF 60 MDQLLWEECR GEEEEVSLWS SLGLKERVTC AMGHLQEVMG GEKELLIQLW VPVERGMRRV 120 LSTEEQPYSL NLFSQSQSLA LYRDISAGYS FAAEVGSDQL VGLPGRVFLN RMPEWTPDVR 180 FFRSEEYLRI GYAHRCQVRA SLALPLFQGP SGTCMGVLEM ITTHPSLEYG SQLHTIHHAL 240 QAFDLRSSET SIVPTSLKMV PFPLPPQPHT DDDLHREVAS ILKGICISYG LPLAITWGHQ 300 QDSCLSAIVS ASYASDQNSR SFLDACSEHH LVAKEGIAGR AFATKKQYIA KDVAILSYPL 360 SHYAKMFDLH AALAIPLLTR YSRNVQFVLE FFFPRDYYCL INQRPILLAS QLSLRFQSSP 420 HLMVDDDQLK LAECMSRKGK GKDVSVSWEM REPSSFSSSS SSCLESRKRK RRDEKDITLD 480 ILRQHFAGSL KDAAKNIGVC PTTLKRICRQ HGISRWPSRK IKKVGHSLRK LQVVMDSVEG 540 VQGSHHLASF YSSFPQLQSP LQLDPTKTVA KSPPPSSSSS SGSSTCCSSE EKDKQLGGGF 600 HKPSSQVLLT LGSSLMKDEQ RPVRATSSLP PLPSARKAKD AGMKVHAMFG DSKMRMRLKH 660 HWGIADLRRE IAKGFGMDDD ALTSNFTLKY MDDDEEWVLL TCDADLEECI QIYKSSLYKE 720 TVRISVSSLL

Sequence ? help Back to Top

Protein Sequence Length: 730 aa Download sequence Send to blast

MLASISSLAL TQSWLTNFIC RSLVHHILVN YLYFVCKYRG MLMQMEESNN SGVVDFPENF  60
MDQLLWEECR GEEEEVSLWS SLGLKERVTC AMGHLQEVMG GEKELLIQLW VPVERGMRRV  120
LSTEEQPYSL NLFSQSQSLA LYRDISAGYS FAAEVGSDQL VGLPGRVFLN RMPEWTPDVR  180
FFRSEEYLRI GYAHRCQVRA SLALPLFQGP SGTCMGVLEM ITTHPSLEYG SQLHTIHHAL  240
QAFDLRSSET SIVPTSLKMV PFPLPPQPHT DDDLHREVAS ILKGICISYG LPLAITWGHQ  300
QDSCLSAIVS ASYASDQNSR SFLDACSEHH LVAKEGIAGR AFATKKQYIA KDVAILSYPL  360
SHYAKMFDLH AALAIPLLTR YSRNVQFVLE FFFPRDYYCL INQRPILLAS QLSLRFQSSP  420
HLMVDDDQLK LAECMSRKGK GKDVSVSWEM REPSSFSSSS SSCLESRKRK RRDEKDITLD  480
ILRQHFAGSL KDAAKNIGVC PTTLKRICRQ HGISRWPSRK IKKVGHSLRK LQVVMDSVEG  540
VQGSHHLASF YSSFPQLQSP LQLDPTKTVA KSPPPSSSSS SGSSTCCSSE EKDKQLGGGF  600
HKPSSQVLLT LGSSLMKDEQ RPVRATSSLP PLPSARKAKD AGMKVHAMFG DSKMRMRLKH  660
HWGIADLRRE IAKGFGMDDD ALTSNFTLKY MDDDEEWVLL TCDADLEECI QIYKSSLYKE  720
TVRISVSSLL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	466	471	RKRKRR

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009101949.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrate. {ECO:0000269\|PubMed:15375205}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009101949.1	0.0	PREDICTED: protein NLP3 isoform X1
Swissprot	Q9SVF1	0.0	NLP3_ARATH; Protein NLP3
TrEMBL	A0A078IZE0	0.0	A0A078IZE0_BRANA; BnaA06g40940D protein
TrEMBL	M4EXM4	0.0	M4EXM4_BRARP; Uncharacterized protein
STRING	Bra033561.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15287	17	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38340.1	0.0	Nin-like family protein

Publications ? help Back to Top
Doidy J, et al. "Hit-and-Run" transcription: de novo transcription initiated by a transient bZIP1 "hit" persists after the "run". BMC Genomics, 2016. 17: p. 92 [PMID:26843062]