PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009101840.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Dof
Protein Properties Length: 235aa    MW: 24599.2 Da    PI: 9.0502
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009101840.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof120.18.1e-382483362
          zf-Dof  3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                    +++l+cprC+stntkfCyynny+ sqPr+fCk+CrryWt+GG+lr++PvGgg+rk  k+s
  XP_009101840.1 24 TEQLPCPRCNSTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPVGGGTRKAAKRS 83
                    6889***************************************************98765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074785.0E-282581IPR003851Zinc finger, Dof-type
PfamPF027016.7E-332581IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.9752781IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102965IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MTTTSNTDAM RLHGVITANP PPATEQLPCP RCNSTNTKFC YYNNYNFSQP RHFCKSCRRY  60
WTHGGTLRDI PVGGGTRKAA KRSRTCSSSA GSRSVPLQAT PVLFPQSSIS NGVSHTVTAP  120
LDGKGSALSL SGSFTSLLNQ NATATHGSGS VLGIGLGSGY DDVSFGLGRA VWPFSTVGDA  180
GTTNVGSNGG HQGVVTIPAT WQFEGLETNN AGGFVSGEYF AWPDLSITTS GNSHK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Constitutively expressed in the whole plant. {ECO:0000269|PubMed:10758484, ECO:0000269|PubMed:8718629}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009101840.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin and salicylic acid (SA). {ECO:0000269|PubMed:10758484}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893791e-102AC189379.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB049N17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009101840.11e-173PREDICTED: dof zinc finger protein DOF3.4-like
RefseqXP_013646932.11e-173dof zinc finger protein DOF3.4
SwissprotQ390881e-105DOF34_ARATH; Dof zinc finger protein DOF3.4
TrEMBLA0A3P5ZJS91e-171A0A3P5ZJS9_BRACM; Uncharacterized protein
TrEMBLM4EMJ01e-171M4EMJ0_BRARP; Uncharacterized protein
STRINGBra030010.1-P1e-172(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22862874
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50410.11e-101OBF binding protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]