PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009101793.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family SBP
Protein Properties Length: 436aa    MW: 48326.7 Da    PI: 7.7506
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009101793.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1291.8e-40181256277
                     -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
             SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                     CqvegC+ dls+ak+yhr+h++Ce hsk p+v+vsg+e+rfCqqCsrfh lsefDe+krsCrrrL++hn+rrrk++
  XP_009101793.1 181 CQVEGCNLDLSSAKDYHRKHRICENHSKFPKVVVSGVERRFCQQCSRFHCLSEFDEKKRSCRRRLSDHNARRRKPN 256
                     **************************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.9E-33174242IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.795178255IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.66E-38179259IPR004333Transcription factor, SBP-box
PfamPF031103.4E-31181254IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MECNAKPSLQ WEWDNLISFG TSSAEIPKKQ RPMDWENDGF DCTTFYSSSF ATEAAYGGGS  60
SGSDLAHAFS KSSKSTSISS SSAEVRTYNF TSEAGESVPP GELGSSEEFA MGIDASPSLE  120
LSFGSGDPVL GLKLGKRTYF EDFWEVENAK GSALPVSLAS SSASPVKKSK TLSQKLQTPH  180
CQVEGCNLDL SSAKDYHRKH RICENHSKFP KVVVSGVERR FCQQCSRFHC LSEFDEKKRS  240
CRRRLSDHNA RRRKPNPGRT YDGKQQMDFV WNRFALIHPR SEENFLWPNP KPVSSRGLLQ  300
EPAKTEMPNK LFTEHCGFGL LDPKTKTTRA ELFSKDLLEK VTISSSHMGA SQDLDGALSL  360
LSNSTPWVSS NQPTRFSLNH HSTSNLQPVV HGSVTQLSSV SSYWQPDPPA AEGSTALTRN  420
GVGQFNENYN LNQFYN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-261812541184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1236253KKRSCRRRLSDHNARRRK
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed constitutively during plant development, weak increase during flowering. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:14573523}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009101793.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156 and miR157 (Probable). Up-regulated by Turnip mosaic virus P1/HC-Pro protein, that acts as an antagonist of miR156. {ECO:0000269|PubMed:12202040, ECO:0000269|PubMed:12586064, ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894130.0AC189413.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB061E18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009101793.10.0PREDICTED: squamosa promoter-binding-like protein 2 isoform X3
RefseqXP_013644999.10.0squamosa promoter-binding-like protein 2 isoform X2
RefseqXP_013645000.10.0squamosa promoter-binding-like protein 2 isoform X2
RefseqXP_018515358.10.0PREDICTED: squamosa promoter-binding-like protein 2 isoform X3
SwissprotQ9S8400.0SPL2_ARATH; Squamosa promoter-binding-like protein 2
TrEMBLA0A078GAD20.0A0A078GAD2_BRANA; BnaA06g36780D protein
STRINGBo7g065290.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.30.0squamosa promoter binding protein-like 2