PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009101738.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 266aa    MW: 29818.5 Da    PI: 5.7855
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009101738.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_150.64.2e-16182241261
                     XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
                     ++ +r+rr++kNRe+A rsR+RK a++ eLe+ +++Le+eN++L  e+ee +ke ++  +
  XP_009101738.1 182 AAAQRQRRMIKNRESAARSRERKHAYQVELETLAAKLEEENEKLSVEIEEKRKERYQKLM 241
                     5789**********************************************9999987665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.3E-13179236No hitNo description
SMARTSM003381.6E-10181245IPR004827Basic-leucine zipper domain
PfamPF001702.8E-15182242IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.082183235IPR004827Basic-leucine zipper domain
CDDcd147072.79E-18185231No hitNo description
SuperFamilySSF579591.38E-9185237No hitNo description
PROSITE patternPS000360188203IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MASFKVMHSP TSTNSDPSRR IPSSSIRPRR DPNARILGGY DGYSPAAMTV EGILHETFAS  60
DPPATDSSLL MDASPTATVS GGTDTRGKSV DEVWRGMKEE EEMMTLEDFL AKATGEDGGG  120
ESDDVDVKIP PAESYGFDHH NPFQMIDKVE GSIVAFGNGV DVYGGGARGK RARVMMEPLD  180
KAAAQRQRRM IKNRESAARS RERKHAYQVE LETLAAKLEE ENEKLSVEIE EKRKERYQKL  240
MEFVIPVVER PKQEPRFLRR IRSLEW
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.99210.0leaf
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8146148}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009101738.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894020.0AC189402.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB057L05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009101738.10.0PREDICTED: G-box-binding factor 4
SwissprotP427772e-62GBF4_ARATH; G-box-binding factor 4
TrEMBLM4EY290.0M4EY29_BRARP; Uncharacterized protein
STRINGBra033719.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38522855
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44080.12e-98bZIP family protein