PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009101718.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ARF
Protein Properties Length: 572aa    MW: 65465.5 Da    PI: 6.8831
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009101718.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B367.22.4e-21125221198
                     EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                     f kvl+ sd++k+g +vl k++a e+    +    s++++ +d +g +W++k++ r++++r+++t+GW+eF k ++L +gD +vF   + +++e 
  XP_009101718.1 125 FTKVLSASDTNKKGSFVLNKRHAIEClplLLT--PSQEVIAKDIHGHEWNFKHTLRGTPQRHLFTSGWNEFSKGKNLVVGDCFVFL--RGENGES 215
                     89*************************86444..3559************************************************..3478888 PP

                     EEEEE- CS
              B3  93 vvkvfr 98 
                     +v++++
  XP_009101718.1 216 RVGIRK 221
                     999987 PP
2Auxin_resp84.22.7e-28248327183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a +a++ k++F v+Y+Pr   s+F v+++k+ + +++k+svG+Rf m+fe+ d+se+r++Gt+vgv+d+++ +W++S+WrsL+
  XP_009101718.1 248 ALNAIKRKCMFVVFYKPRL--SQFLVNFDKFIDGVDRKFSVGSRFLMKFEGRDFSEIRYYGTIVGVKDFST-HWKDSEWRSLE 327
                     6799**************7..9**********************************************777.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-31116232IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.85E-25122222IPR015300DNA-binding pseudobarrel domain
CDDcd100175.47E-21124221No hitNo description
PROSITE profilePS5086312.717125223IPR003340B3 DNA binding domain
SMARTSM010194.5E-17125223IPR003340B3 DNA binding domain
PfamPF023623.4E-18125221IPR003340B3 DNA binding domain
PfamPF065079.6E-25248326IPR010525Auxin response factor
SuperFamilySSF542775.69E-7461536No hitNo description
PROSITE profilePS5174519.107461543IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MATDQIMHVQ PESLATDGTN NYLYDQLWKL CAGPLFHLPK VGEKINYFPQ GHIEQLVTSM  60
NDELCQLKPI FDIPSKICCN VFSIKLKVET TTDEIYAEIS LLPDTSEVEI PTPRHENNIQ  120
NINYFTKVLS ASDTNKKGSF VLNKRHAIEC LPLLLTPSQE VIAKDIHGHE WNFKHTLRGT  180
PQRHLFTSGW NEFSKGKNLV VGDCFVFLRG ENGESRVGIR KSAHHQQHNI PSQLISKQSM  240
YHGVVATALN AIKRKCMFVV FYKPRLSQFL VNFDKFIDGV DRKFSVGSRF LMKFEGRDFS  300
EIRYYGTIVG VKDFSTHWKD SEWRSLEVQW DESATIPRPD KVSPWEIEPL THSSNILKSV  360
FLKNKRQSEI DDFGQEVGQT SIQSSMSYSF PSMSKPNYNE QMVQALKETS TTTEATSYRL  420
FGVDLTVPGK TKDPVQPTHS YKKSKISKIF EEVKVDHIQT KTHTKVCMEG TVERTVDLTV  480
FDGYNQLIHE LERLFDIKDK LHMHNQWKIV FINADGDMML LGDDPWPKFC NTAKEIFIYS  540
ESDAKIGNED NKFAEGGPML TTTILPPDVN NN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1132035716362Auxin response factor 1
4ldw_A1e-1132035716362Auxin response factor 1
4ldw_B1e-1132035716362Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009101718.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009101718.10.0PREDICTED: auxin response factor 20-like
SwissprotQ9C7I90.0ARFT_ARATH; Auxin response factor 20
TrEMBLA0A078IDQ20.0A0A078IDQ2_BRANA; Auxin response factor
STRINGBo7g067390.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7653631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35240.10.0auxin response factor 20