PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009101486.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 285aa    MW: 31333.8 Da    PI: 9.382
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009101486.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.51.1e-11555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT +E+  l+ +v ++G+g W+tI +        k R+  ++k++w++
   XP_009101486.1  5 KQKWTSQEETALKAGVLKHGTGKWRTILSDPEftsilKSRSNVDLKDKWRN 55
                     79***********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.95161IPR017930Myb domain
SuperFamilySSF466896.55E-15259IPR009057Homeodomain-like
SMARTSM007172.5E-5459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.5E-13456IPR009057Homeodomain-like
PfamPF002492.4E-7555IPR001005SANT/Myb domain
CDDcd116607.52E-19656No hitNo description
SMARTSM005262.0E-599180IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150414.662117185IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467853.59E-9120190IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.4E-7120190IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005730Cellular Componentnucleolus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043047Molecular Functionsingle-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MGAPKQKWTS QEETALKAGV LKHGTGKWRT ILSDPEFTSI LKSRSNVDLK DKWRNISVTA  60
MYGSRKKAKL ALKRTPSSHD DDNATALTIV AIANGAQHIS PLPPALSCAP PRDFEGLFSS  120
VDKMILEAIA NFNRHLGPDG KSILLYVEER HNMQPDMKRL VTSRLKHLVN VGTIVKIKHR  180
YRICRNAAEQ SSPQLFLEGN KESGVQQHLT NSQVDGELFM IKGMTAQEAA AAAARAVAEA  240
EFAIAEAEEA AREADEAEAE AEAAHIFAKA AIKAFKYRMQ CSEAR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.79030.0flower| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:15060584}.
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand. {ECO:0000269|PubMed:19102728}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009101486.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009101486.10.0PREDICTED: telomere repeat-binding factor 3
SwissprotQ9M2X31e-111TRB3_ARATH; Telomere repeat-binding factor 3
TrEMBLA0A398AP520.0A0A398AP52_BRACM; Uncharacterized protein
STRINGBo1g081300.11e-175(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38092759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49850.12e-96telomere repeat binding factor 3
Publications ? help Back to Top
  1. Denis E, et al.
    WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis.
    Plant J., 2017. 90(3): p. 560-572
    [PMID:28218997]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]