PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009101439.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 218aa    MW: 23996.8 Da    PI: 8.6396
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009101439.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.91.6e-15118168255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y GVr+++ +g+++A Irdp +  k +r +lg+f tae+Aa a+++a+ +++g
  XP_009101439.1 118 HYIGVRQRP-WGKFAAGIRDPAK--KGAREWLGTFETAEDAALAYDRAAFRMRG 168
                     799******.**********954..34*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.20E-28117176No hitNo description
SuperFamilySSF541719.81E-22118178IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.5E-29118176IPR001471AP2/ERF domain
PROSITE profilePS5103222.194118176IPR001471AP2/ERF domain
PfamPF008471.6E-10118168IPR001471AP2/ERF domain
SMARTSM003801.2E-34118182IPR001471AP2/ERF domain
PRINTSPR003676.3E-12119130IPR001471AP2/ERF domain
PRINTSPR003676.3E-12158178IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MYGEGEITAA AESDYALLES IRRHLLGGDN ELRINESIPS SCFTQSWGDL PLKENDSEDM  60
LVYSVLNDAF ETPSPSSDLS CLSDFNYFPA VKTESLDTFA AVVEKPKAVA SPPGKGKHYI  120
GVRQRPWGKF AAGIRDPAKK GAREWLGTFE TAEDAALAYD RAAFRMRGSR ALLNFPLRVN  180
SGEPDPVRIK SKRSYKSSSS SSSANGKPKQ RRRTENVP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-40115183270ATERF1
3gcc_A3e-40115183270ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.266390.0leaf
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Involved in disease resistance pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630, ECO:0000269|PubMed:9756931}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009101439.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA) and Alternaria brassicicola (locally and systemically). Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2) while wounding induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892610.0AC189261.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB021P11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009101439.11e-160PREDICTED: ethylene-responsive transcription factor 2
SwissprotO803381e-98EF101_ARATH; Ethylene-responsive transcription factor 2
TrEMBLM4E8481e-159M4E848_BRARP; Uncharacterized protein
STRINGBra024954.1-P1e-159(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.12e-80ethylene responsive element binding factor 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]