PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009101439.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ERF | ||||||||
Protein Properties | Length: 218aa MW: 23996.8 Da PI: 8.6396 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 48.9 | 1.6e-15 | 118 | 168 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y GVr+++ +g+++A Irdp + k +r +lg+f tae+Aa a+++a+ +++g XP_009101439.1 118 HYIGVRQRP-WGKFAAGIRDPAK--KGAREWLGTFETAEDAALAYDRAAFRMRG 168 799******.**********954..34*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.20E-28 | 117 | 176 | No hit | No description |
SuperFamily | SSF54171 | 9.81E-22 | 118 | 178 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.5E-29 | 118 | 176 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.194 | 118 | 176 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.6E-10 | 118 | 168 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-34 | 118 | 182 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.3E-12 | 119 | 130 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.3E-12 | 158 | 178 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MYGEGEITAA AESDYALLES IRRHLLGGDN ELRINESIPS SCFTQSWGDL PLKENDSEDM 60 LVYSVLNDAF ETPSPSSDLS CLSDFNYFPA VKTESLDTFA AVVEKPKAVA SPPGKGKHYI 120 GVRQRPWGKF AAGIRDPAKK GAREWLGTFE TAEDAALAYD RAAFRMRGSR ALLNFPLRVN 180 SGEPDPVRIK SKRSYKSSSS SSSANGKPKQ RRRTENVP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-40 | 115 | 183 | 2 | 70 | ATERF1 |
3gcc_A | 3e-40 | 115 | 183 | 2 | 70 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bra.26639 | 0.0 | leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Involved in disease resistance pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630, ECO:0000269|PubMed:9756931}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009101439.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA) and Alternaria brassicicola (locally and systemically). Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2) while wounding induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189261 | 0.0 | AC189261.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB021P11, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009101439.1 | 1e-160 | PREDICTED: ethylene-responsive transcription factor 2 | ||||
Swissprot | O80338 | 1e-98 | EF101_ARATH; Ethylene-responsive transcription factor 2 | ||||
TrEMBL | M4E848 | 1e-159 | M4E848_BRARP; Uncharacterized protein | ||||
STRING | Bra024954.1-P | 1e-159 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47220.1 | 2e-80 | ethylene responsive element binding factor 2 |
Publications ? help Back to Top | |||
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