PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009101438.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 295aa MW: 33278.2 Da PI: 4.7733 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.7 | 1.9e-20 | 154 | 204 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g++++eIrdp+++g r++lg+f+ta eAa+a+++a+ +l+g XP_009101438.1 154 HYRGVRQRP-WGKFASEIRDPNKRG--SRIWLGTFDTAIEAARAYDEAAFRLRG 204 7********.**********96655..*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 4.0E-33 | 153 | 213 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.1E-37 | 154 | 218 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.1E-14 | 154 | 204 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.026 | 154 | 212 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.84E-32 | 154 | 212 | No hit | No description |
SuperFamily | SSF54171 | 2.16E-22 | 154 | 214 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.1E-10 | 155 | 166 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-10 | 178 | 194 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 295 aa Download sequence Send to blast |
MANPSEVSSA LWFIEKHLLD VVSPVAKDCW MVHESAANES SSDSSPMIFG PSSEIKPEII 60 DLSTPRFMDL ISTPFEFDTA VCSVSDFDFK PTFQTGNQFE PEFKTQTPCA SDDSHSNRKP 120 PLKISVPTKT EWIQFNPQPE VTKPVQPDAE EQRHYRGVRQ RPWGKFASEI RDPNKRGSRI 180 WLGTFDTAIE AARAYDEAAF RLRGSKAILN FPLEVGKWKS RSDADGEKKR KREENDDEDV 240 AVVEKALKTE QSVDGKEAFN LTEFCEWDVT GLLNFPLLSP LSPHPSFGYS QLTVV |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-30 | 153 | 215 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 5e-30 | 153 | 215 | 4 | 66 | ATERF1 |
3gcc_A | 5e-30 | 153 | 215 | 4 | 66 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Bra.5919 | 0.0 | leaf |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:9756931}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_009101438.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC189261 | 0.0 | AC189261.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB021P11, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009101438.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor 5 | ||||
Swissprot | O80341 | 1e-133 | EF102_ARATH; Ethylene-responsive transcription factor 5 | ||||
TrEMBL | M4E847 | 0.0 | M4E847_BRARP; Uncharacterized protein | ||||
STRING | Bra024953.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G47230.1 | 5e-98 | ethylene responsive element binding factor 5 |
Publications ? help Back to Top | |||
---|---|---|---|
|