PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy18g01260
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family NF-YC
Protein Properties Length: 397aa    MW: 42397.2 Da    PI: 6.3886
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy18g01260genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC1726.8e-541822841100
          NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflv 93 
                    ql+ fw++q   +e+atdfknh+lPlarikki+k+dedv+mis+eaPvl++kace+fileltlrsw+h+eenkrrtl+++dia+a+trtdifdflv
  Bathy18g01260 182 QLRLFWQQQmteVETATDFKNHQLPLARIKKIMKTDEDVRMISSEAPVLFAKACEMFILELTLRSWIHSEENKRRTLQRNDIASAITRTDIFDFLV 277
                    79******97777999******************************************************************************** PP

          NF-YC  94 divprde 100
                    divpr++
  Bathy18g01260 278 DIVPRED 284
                    *****97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.85E-34138276IPR009072Histone-fold
PfamPF008083.2E-21204267IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.0E-36205282IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MMAKGDSGFA KTANAASGNG TNGDQDGMPI VLASGSFNPT SSAAGMQHNS FHPPPYGGQQ  60
QQQQHYGQGT QGDSNFAAGN VFLNTNNASN NNNNKDNNYN YNSSSQQQHQ QSGGGGGGGM  120
VPPGGYPPQQ YHPYHHQMHH HIPPPQVQQQ QQQQQQQQQA PQNQMQHQTP LQQQLQQQHQ  180
QQLRLFWQQQ MTEVETATDF KNHQLPLARI KKIMKTDEDV RMISSEAPVL FAKACEMFIL  240
ELTLRSWIHS EENKRRTLQR NDIASAITRT DIFDFLVDIV PREDGSAGGN NAAAIAAAAA  300
AAALGQEQQK QQGGGGGGNL ATVMGGGGPS VQVKQEENGT GLGAGNGNTT DASYNTYPPQ  360
PTTVVASDAT PASQPSQQDG IKKEGGGQTD AVVPLI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B4e-53190282395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1254260RRTLQRN
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822610.0FO082261.1 Bathycoccus prasinos genomic : Chromosome_18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007508158.10.0predicted protein
TrEMBLK8ERR50.0K8ERR5_9CHLO; Uncharacterized protein
STRINGXP_007508158.10.0(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP21951616
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.22e-54nuclear factor Y, subunit C4