PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bathy18g01260 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
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Family | NF-YC | ||||||||
Protein Properties | Length: 397aa MW: 42397.2 Da PI: 6.3886 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 172 | 6.8e-54 | 182 | 284 | 1 | 100 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflv 93 ql+ fw++q +e+atdfknh+lPlarikki+k+dedv+mis+eaPvl++kace+fileltlrsw+h+eenkrrtl+++dia+a+trtdifdflv Bathy18g01260 182 QLRLFWQQQmteVETATDFKNHQLPLARIKKIMKTDEDVRMISSEAPVLFAKACEMFILELTLRSWIHSEENKRRTLQRNDIASAITRTDIFDFLV 277 79******97777999******************************************************************************** PP NF-YC 94 divprde 100 divpr++ Bathy18g01260 278 DIVPRED 284 *****97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 2.85E-34 | 138 | 276 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.2E-21 | 204 | 267 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.0E-36 | 205 | 282 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 397 aa Download sequence Send to blast |
MMAKGDSGFA KTANAASGNG TNGDQDGMPI VLASGSFNPT SSAAGMQHNS FHPPPYGGQQ 60 QQQQHYGQGT QGDSNFAAGN VFLNTNNASN NNNNKDNNYN YNSSSQQQHQ QSGGGGGGGM 120 VPPGGYPPQQ YHPYHHQMHH HIPPPQVQQQ QQQQQQQQQA PQNQMQHQTP LQQQLQQQHQ 180 QQLRLFWQQQ MTEVETATDF KNHQLPLARI KKIMKTDEDV RMISSEAPVL FAKACEMFIL 240 ELTLRSWIHS EENKRRTLQR NDIASAITRT DIFDFLVDIV PREDGSAGGN NAAAIAAAAA 300 AAALGQEQQK QQGGGGGGNL ATVMGGGGPS VQVKQEENGT GLGAGNGNTT DASYNTYPPQ 360 PTTVVASDAT PASQPSQQDG IKKEGGGQTD AVVPLI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 4e-53 | 190 | 282 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 254 | 260 | RRTLQRN |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FO082261 | 0.0 | FO082261.1 Bathycoccus prasinos genomic : Chromosome_18. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007508158.1 | 0.0 | predicted protein | ||||
TrEMBL | K8ERR5 | 0.0 | K8ERR5_9CHLO; Uncharacterized protein | ||||
STRING | XP_007508158.1 | 0.0 | (Bathycoccus prasinos) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP2195 | 16 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63470.2 | 2e-54 | nuclear factor Y, subunit C4 |
Link Out ? help Back to Top | |
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Entrez Gene | 19010881 |