PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy17g02050
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family WRKY
Protein Properties Length: 302aa    MW: 34844.7 Da    PI: 4.5234
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy17g02050genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY62.47.8e-20224276252
                    --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSST.TEEEEEE CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedp.kvveitY 52 
                    +D+ +WrKYGqK vkgs++prsYY+Cts  + + +k+ve  ++++ + + +t+
  Bathy17g02050 224 SDEMRWRKYGQKFVKGSKYPRSYYKCTSIsNMNIQKHVEEVDDNGgQKILVTF 276
                    799************************9889********98866425555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.8E-18213275IPR003657WRKY domain
SuperFamilySSF1182904.71E-16217274IPR003657WRKY domain
PROSITE profilePS5081116.524218262IPR003657WRKY domain
SMARTSM007746.8E-13223281IPR003657WRKY domain
PfamPF031063.6E-15225277IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MIDEERKRLR TTRREKEEEA HRRGSFSSSS PVLLLSPKNF STTSACGFFS SFSSSCLQSP  60
TTGRIHHQNR TRRRRRQHQR EDDEDDEDDE DERGRISLLL PFHDDEDEED EPSSLCASSS  120
SEDEEEDQED QEEEEEEDSL SKRVFSPLLY FYDSNKTLSE KEEEEEEEKD EGEPDQREER  180
MAGVSTTRTT SRDAATLVYL RGNSSKENAA SFRVVVLTTD GKTSDEMRWR KYGQKFVKGS  240
KYPRSYYKCT SISNMNIQKH VEEVDDNGGQ KILVTFHTQS LDFAKDLERR IPGSALIMPT  300
D*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16375RIHHQNRTRRRRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822620.0FO082262.1 Bathycoccus prasinos genomic : Chromosome_17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007508474.10.0unknown
TrEMBLK8FDL40.0K8FDL4_9CHLO; Uncharacterized protein
STRINGXP_007508474.10.0(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP4691626
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.12e-12WRKY DNA-binding protein 7