PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bathy17g00320

Organism

Bathycoccus prasinos

Taxonomic ID

41875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus

Family

Nin-like

Protein Properties

Length: 1232aa MW: 134937 Da PI: 6.8634

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bathy17g00320	genome	ORCAE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	71.7	9.8e-23	575	622	4	51
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 i+le l+ +Fs+++kdAA +Lgv+ T+LKriCRqyGI RWP+R +ks Bathy17g00320 575 GITLELLQTQFSKHLKDAATDLGVGSTTLKRICRQYGIGRWPRRSLKS 622 69********************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	15.426	558	643	IPR003035	RWP-RK domain
Pfam	PF02042	1.3E-18	576	622	IPR003035	RWP-RK domain
SuperFamily	SSF54277	8.83E-12	974	1043	No hit	No description
Gene3D	G3DSA:3.10.20.240	5.7E-14	974	1047	No hit	No description
SMART	SM00666	1.1	975	1045	IPR000270	PB1 domain
Pfam	PF00564	1.3E-4	977	1039	IPR000270	PB1 domain
SuperFamily	SSF54277	6.21E-11	1145	1220	No hit	No description
PROSITE profile	PS51745	12.04	1145	1231	IPR000270	PB1 domain
SMART	SM00666	0.0011	1145	1231	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.4E-10	1145	1217	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1232 aa Download sequence Send to blast
MRLKSGRSPR ESETNSDMNR DEDITNASRG KTSTTFTTHE KKEGTVEDGS EQHPQFAVTL 60 LEKHQEQQQQ QQQQQNDLTS PPPTKGQDEK PNEMSRARRK KNEAIAVVSE LYRLHEVGKK 120 TNFRVTQEGL YQTMVELVNN ISARVEKSNM VQMWVPRIAG KSVVMTTHGE LCKISAKKKT 180 HDSVLAKKFT ENTTAFFFNC EVTNGEGMLG LPGRCYVLSR PEFTPSVTSY RPMEYVRVAC 240 AYECRIHTTM CLPVFLSEEA MKSERPFTIL EVALCHMTES IGELYAATAH EFMKLGLFTT 300 GHDRVGPERY MRKFIESTVE TLAPGHANAL ELMCETLNVP FAQFWIESNG LIVTAGCPYF 360 VKEKECQSYR DMSSQISLMI GQGPVGQAHS KETLIWVDDV QKASQIEWPL HHTSILLGLR 420 GLCACKMRID CVLPDGTKKK TDAILEILLN PKLQTSAEQI QTVEEVWSYL QRGVRVDNTK 480 NAPDGASAPA VPDSPLAATA GVRGNDEQPA SMLMELPDLT GKNNNTDTTR EGKNNDDKTG 540 KGKGAAPMTT LQAVEHISMV NKGPDEKNKT SAPWGITLEL LQTQFSKHLK DAATDLGVGS 600 TTLKRICRQY GIGRWPRRSL KSKQYKAMKE AAKQQSSQNK LRKARSSGGH SSGGSPRDGG 660 SSFKSSGGDS DAVAGESVHG PGGRMSGGGS LSNLAKTGDG SPLGDGLFTM GSTGGAPIRG 720 KEGSGGVGAL LGSGEEGRSH GGFQAFRGIA TQGQFDWGDE EERERGASWH AGSGFVSHGR 780 LKNAKGQIVA SGSQHGGHTA SQFFGAQQHQ QPHQSMPIAP AMQQGDFGLA AEKAETKTPN 840 KKYKKDVAVG TKAGAGKAAV PFSFDDHFYE TVHGAHNFSQ QLYPHQYNNN DDSVHGSTYS 900 ESAHGGSHYN GGSMHGNPGG DHSVHGTTAL AGILNNTLGG FDDDLFIAND TMEEADADMM 960 AILLNEGEKV EEVPQLVVKF RVGADTIRFR LLHKWSVQML LDRIRKLIVF PDSAKLKYMD 1020 DEDDMCILQS EHDLDECIKF TEHRKKESGN SGNNKSATND PVVIGESNAQ NNARQQQQQQ 1080 QQQKQELLAT GFAPNKPNGG EITIFICLAD GSMPSLNAYE LIKQDIHSIP PSLSASVNAR 1140 RDQLTINVKV THDNDTCRFL LEPKMNHVTL MEHVLKLFGI QKETSSSSHY HRLTYLDDSE 1200 EWITLAGDLD LDECRALCGC SPSLRMKLLD R*

Sequence ? help Back to Top

Protein Sequence Length: 1232 aa Download sequence Send to blast

MRLKSGRSPR ESETNSDMNR DEDITNASRG KTSTTFTTHE KKEGTVEDGS EQHPQFAVTL  60
LEKHQEQQQQ QQQQQNDLTS PPPTKGQDEK PNEMSRARRK KNEAIAVVSE LYRLHEVGKK  120
TNFRVTQEGL YQTMVELVNN ISARVEKSNM VQMWVPRIAG KSVVMTTHGE LCKISAKKKT  180
HDSVLAKKFT ENTTAFFFNC EVTNGEGMLG LPGRCYVLSR PEFTPSVTSY RPMEYVRVAC  240
AYECRIHTTM CLPVFLSEEA MKSERPFTIL EVALCHMTES IGELYAATAH EFMKLGLFTT  300
GHDRVGPERY MRKFIESTVE TLAPGHANAL ELMCETLNVP FAQFWIESNG LIVTAGCPYF  360
VKEKECQSYR DMSSQISLMI GQGPVGQAHS KETLIWVDDV QKASQIEWPL HHTSILLGLR  420
GLCACKMRID CVLPDGTKKK TDAILEILLN PKLQTSAEQI QTVEEVWSYL QRGVRVDNTK  480
NAPDGASAPA VPDSPLAATA GVRGNDEQPA SMLMELPDLT GKNNNTDTTR EGKNNDDKTG  540
KGKGAAPMTT LQAVEHISMV NKGPDEKNKT SAPWGITLEL LQTQFSKHLK DAATDLGVGS  600
TTLKRICRQY GIGRWPRRSL KSKQYKAMKE AAKQQSSQNK LRKARSSGGH SSGGSPRDGG  660
SSFKSSGGDS DAVAGESVHG PGGRMSGGGS LSNLAKTGDG SPLGDGLFTM GSTGGAPIRG  720
KEGSGGVGAL LGSGEEGRSH GGFQAFRGIA TQGQFDWGDE EERERGASWH AGSGFVSHGR  780
LKNAKGQIVA SGSQHGGHTA SQFFGAQQHQ QPHQSMPIAP AMQQGDFGLA AEKAETKTPN  840
KKYKKDVAVG TKAGAGKAAV PFSFDDHFYE TVHGAHNFSQ QLYPHQYNNN DDSVHGSTYS  900
ESAHGGSHYN GGSMHGNPGG DHSVHGTTAL AGILNNTLGG FDDDLFIAND TMEEADADMM  960
AILLNEGEKV EEVPQLVVKF RVGADTIRFR LLHKWSVQML LDRIRKLIVF PDSAKLKYMD  1020
DEDDMCILQS EHDLDECIKF TEHRKKESGN SGNNKSATND PVVIGESNAQ NNARQQQQQQ  1080
QQQKQELLAT GFAPNKPNGG EITIFICLAD GSMPSLNAYE LIKQDIHSIP PSLSASVNAR  1140
RDQLTINVKV THDNDTCRFL LEPKMNHVTL MEHVLKLFGI QKETSSSSHY HRLTYLDDSE  1200
EWITLAGDLD LDECRALCGC SPSLRMKLLD R*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	176	180	KKKTH
2	681	688	GGRMSGGG

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FO082262	0.0	FO082262.1 Bathycoccus prasinos genomic : Chromosome_17.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007508332.1	0.0	nodule inception protein
TrEMBL	K8EQY9	0.0	K8EQY9_9CHLO; Nodule inception protein
STRING	XP_007508332.1	0.0	(Bathycoccus prasinos)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP5474	6	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	2e-32	Nin-like family protein

Link Out ? help Back to Top
Entrez Gene	19010940