PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bathy16g02510 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
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Family | C3H | ||||||||
Protein Properties | Length: 307aa MW: 32967.6 Da PI: 8.0005 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.7 | 8.2e-08 | 270 | 290 | 4 | 25 |
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 ++C f ar G Ck Gd Ck++H Bathy16g02510 270 VPCIFLAR-GSCKNGDACKYSH 290 58**8888.************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.535 | 266 | 293 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.63E-5 | 266 | 291 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0032 | 267 | 292 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-5 | 271 | 290 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MEAEPTNGID IDALNNEETM LSENNPTTTR KKGEDQPTLE GWICVTGEEA LKAQYKGPCS 60 KCSQDMQVSF RPYVGGKPPV CDTCFKAEKF NNRNFTNNNN NRRSQRHQQQ SSQAPTLRGW 120 RETTKRDEKS GKSIFEGPCG GCQKHTEVPF RPVSAPDARP PLCDTCYASL QEVTNPDGGN 180 GAGGKSRGRN ANNDRFSPYG VGGAAGRGGR GGRGGRGTQM MMVPQHVAHS MMLAQQIGGG 240 RGAGKGKSKK WTRDGAEENA IGVEVDTSNV PCIFLARGSC KNGDACKYSH TLMAEGDDDM 300 GDIPVE* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FO082263 | 0.0 | FO082263.1 Bathycoccus prasinos genomic : Chromosome_16. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007508694.1 | 0.0 | predicted protein | ||||
TrEMBL | K8EQI7 | 0.0 | K8EQI7_9CHLO; Uncharacterized protein | ||||
STRING | XP_007508694.1 | 0.0 | (Bathycoccus prasinos) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP6479 | 5 | 5 |
Link Out ? help Back to Top | |
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Entrez Gene | 19011314 |