PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy16g02510
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family C3H
Protein Properties Length: 307aa    MW: 32967.6 Da    PI: 8.0005
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy16g02510genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.78.2e-08270290425
                    ---SGGGGTS--TTTTT-SS-S CS
        zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                    ++C f ar G Ck Gd Ck++H
  Bathy16g02510 270 VPCIFLAR-GSCKNGDACKYSH 290
                    58**8888.************* PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.535266293IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-5266291IPR000571Zinc finger, CCCH-type
SMARTSM003560.0032267292IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-5271290IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MEAEPTNGID IDALNNEETM LSENNPTTTR KKGEDQPTLE GWICVTGEEA LKAQYKGPCS  60
KCSQDMQVSF RPYVGGKPPV CDTCFKAEKF NNRNFTNNNN NRRSQRHQQQ SSQAPTLRGW  120
RETTKRDEKS GKSIFEGPCG GCQKHTEVPF RPVSAPDARP PLCDTCYASL QEVTNPDGGN  180
GAGGKSRGRN ANNDRFSPYG VGGAAGRGGR GGRGGRGTQM MMVPQHVAHS MMLAQQIGGG  240
RGAGKGKSKK WTRDGAEENA IGVEVDTSNV PCIFLARGSC KNGDACKYSH TLMAEGDDDM  300
GDIPVE*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822630.0FO082263.1 Bathycoccus prasinos genomic : Chromosome_16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007508694.10.0predicted protein
TrEMBLK8EQI70.0K8EQI7_9CHLO; Uncharacterized protein
STRINGXP_007508694.10.0(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP647955