PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy16g02130
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family GATA
Protein Properties Length: 440aa    MW: 50945.9 Da    PI: 5.6906
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy16g02130genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA43.83.6e-1481112133
           GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33 
                    C+ Cg+t+Tp+WR++++g++ +CnaCG+++ ++
  Bathy16g02130  81 CVECGATETPQWRKDESGES-VCNACGVRNLRR 112
                    ********************.******997555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011415.32775129IPR000679Zinc finger, GATA-type
SMARTSM004015.3E-1075127IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.8E-1177126No hitNo description
Gene3DG3DSA:3.30.50.105.3E-1480115IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.75E-980124No hitNo description
PfamPF003206.3E-1181109IPR000679Zinc finger, GATA-type
PROSITE patternPS00344081105IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MRGKGAAGFR SRRKSRSETP SPPPSPSFLT TTRTTTTTTN ETKEDEDDLH SKDRVERLVA  60
CEIARRKELK RRRNDMLDLK CVECGATETP QWRKDESGES VCNACGVRNL RRRRKKQREM  120
QRAKDIQQQE EKKKIKKEKK RLVKMALFGE ASTSTSSSSF SDDEDSEETE YGKEQRREYY  180
QQLLLLRQQE LQRERHQQQQ RERQQQQQQQ QQQQQQQQRA WRGMPQFPSV INDIVEAVRY  240
TFSSSTSNWK NEDQRVRAAE KLANSLCEME EEFLQEEGAN DDIAAKAAQH QQRQEETEEE  300
EEVEHQQKTI TGSDNEENEN NFVSNAVPPN HMLGYNHAIQ EMMRSVVDQS NRPRPSSSAN  360
DGTVEEEEDL EEDANNDEGF RIQNLVSNNS PKGPSGKAAK PDIINSMEKE RIVKAIQQKY  420
WSNKDKDGLS SARQLSKEE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111117RRRKKQR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822630.0FO082263.1 Bathycoccus prasinos genomic : Chromosome_16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007508650.10.0unknown protein
TrEMBLK8EPS00.0K8EPS0_9CHLO; Uncharacterized protein
STRINGXP_007508650.10.0(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP2201430