PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy16g00780
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family MYB
Protein Properties Length: 1341aa    MW: 149166 Da    PI: 6.0471
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy16g00780genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.61.6e-14249294248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      + WTteEde+l  +v+++G++ W+  a+ m   R +kqc++r+ ++l
    Bathy16g00780 249 QTWTTEEDERLCALVERFGSKKWSFLAQLMV-DRKGKQCRDRYINHL 294
                      78*****************************.************996 PP
2Myb_DNA-binding37.45.7e-12300342145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      rg WT eE+   v++++ lG++ W++ a+ ++ gR ++ +k++w+
    Bathy16g00780 300 RGEWTVEEEYMVVQGHRVLGTR-WAALAKVVP-GRPENAVKNHWH 342
                      89********************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.93245294IPR017930Myb domain
SMARTSM007171.1E-11247296IPR001005SANT/Myb domain
SuperFamilySSF466895.24E-26247341IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-20250301IPR009057Homeodomain-like
CDDcd001672.66E-10250294No hitNo description
PfamPF139211.1E-13251308No hitNo description
PROSITE profilePS5129419.739295349IPR017930Myb domain
SMARTSM007171.1E-10299347IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.3E-15302346IPR009057Homeodomain-like
CDDcd001673.51E-7302342No hitNo description
Gene3DG3DSA:2.20.25.802.6E-14638705IPR003657WRKY domain
PROSITE profilePS5081115.916646705IPR003657WRKY domain
SMARTSM007743.1E-15651704IPR003657WRKY domain
SuperFamilySSF1182902.62E-15652705IPR003657WRKY domain
PfamPF031061.8E-13653702IPR003657WRKY domain
SuperFamilySSF577163.14E-6841875No hitNo description
Gene3DG3DSA:3.30.50.109.3E-6843874IPR013088Zinc finger, NHR/GATA-type
PfamPF003202.1E-6847873IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.695847872IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1341 aa     Download sequence    Send to blast
MEPYFARRVN AGTTPSGENT TNTTTKSNNT NTEKDDAGEE EEEETRLADA VDDAKEVKKS  60
SPPPEEDQLF LQGSRETTTL AGEEGKTMTT MTTTEEEIAE PVDVIVVGEK EVPAKLPTSS  120
PSPSSKGGAA VEEESVVPKL PFPVLIASAA TTTTTTDNNT GGENGVTTSA ATTSEGGLNE  180
EEDVNLAVFT KRGLKRQRKY TDVDENGLTK NGKRKGRPAK DVTGLTVQEL RVQAREDSLA  240
AGVGNSRHQT WTTEEDERLC ALVERFGSKK WSFLAQLMVD RKGKQCRDRY INHLAPSIKR  300
GEWTVEEEYM VVQGHRVLGT RWAALAKVVP GRPENAVKNH WHACRRTKFE AKALLRPLYR  360
YQLMELNTII EPPSEESLKE AKEKLGDEYP PDGPVETPKE SFENETEQKT FEKRLAKLAS  420
KKQVRDYDPV DDDTEEEEEE EEEVEDEKLD SSEAEALREK KRLAKLLKEH QEKEKREKQE  480
RQKLLVEQQR KLMPKKTRAN SRKAKSLSGA IKEVDAKMET NALVNAVKSE LDSQAVATEA  540
AEGLLKGLPG NAPDDENEEE HAAKSISPVM MALGPAPQMP KVKVQELPLP KVKVPELPLP  600
KIGGYIKSTW KQPEPSSLNP KSKGRRAQKY KDNEKKRKEE KMKKGTIKES DSDGYSWRKY  660
GEKELKSGSS TKSYYRCARL DCPAKKTIER GMTVYTYAEH THDKPKASFK PEASFEDAED  720
MRRHEQELDL ILAAAEEMDG GASMETSEEE FTREADLDYE EPEIDEETDP VVLERRRAKW  780
LEQQIFGDAK RTKLAPAEAA AFQQDFVGDQ QLKQKRKYTR KGEGVKKPGP GSEKKFKVTN  840
AEYQGPCMLC GTRLTPCWRS VGNLKLCNAC GIRIYRDYAV EKEEATALLE LAQGLGAAKS  900
KQEAVRTVNR RLPGRCKTDQ QDLERFALSK YPKLQLVLTT NLETIGIDLP AKMKVHKVKA  960
QPRKNFQAPI ASRVPTKKRT MINYRKRVIT LDEIVNNDDD DVAEAAAMLQ LQQQRGTRAD  1020
QSNNYLFYLP IKKRRDARMN ENGTLTAIDT VSGEDVPEYM DVMQKSGGTV RNPLSLLASS  1080
VSLRLDDIDE PESVTPPATT EVLALPTTSA TTTVVTAAAA EKSNNDVTTP YAAQGEATTI  1140
AATTTEMTTV DPQLSSIENK EQKGTTVVTP AKREQPHAGP RAAPKKRTAI EDFIEVTEWP  1200
LDTNRCINAA RSRNTSLEVA SLTTKAACDG PIQLRGPNVS ISRDKLVAGL KRIASNAREK  1260
IAKQRMKRAG TDPESFQSNP LNRSNGRCAI SIRQNSCKKG DLQMIIVCSS ENFRDAISCA  1320
EDCAVQIKED FDFESVIDAP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-3025135010109B-MYB
1gv2_A4e-302513497105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822630.0FO082263.1 Bathycoccus prasinos genomic : Chromosome_16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007508502.10.0unnamed protein product
TrEMBLK8EQA40.0K8EQA4_9CHLO; Unnamed protein product
STRINGXP_007508502.10.0(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP4691626
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.11e-31myb domain protein 3r-4