PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bathy16g00660 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
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Family | C2H2 | ||||||||
Protein Properties | Length: 238aa MW: 26668 Da PI: 10.4008 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.1 | 0.00029 | 140 | 159 | 2 | 21 |
EETTTTEEESSHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHir 21 kC+ C sF+++ +L+ H++ Bathy16g00660 140 KCELCELSFTSRAQLEEHLQ 159 7*****************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.88E-9 | 124 | 167 | No hit | No description |
SMART | SM00451 | 0.087 | 136 | 170 | IPR003604 | Zinc finger, U1-type |
SMART | SM00355 | 0.31 | 139 | 163 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12874 | 1.3E-7 | 140 | 163 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 141 | 163 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.05E-8 | 191 | 228 | No hit | No description |
SMART | SM00451 | 0.016 | 193 | 227 | IPR003604 | Zinc finger, U1-type |
SMART | SM00355 | 77 | 196 | 220 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12874 | 7.6E-5 | 197 | 220 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 198 | 220 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MKEKKEKKEK KKRKSSTQRE EEEENGDKKK KKKRLEITSN PTTNLNDIDA EIERVLSRLK 60 NEKESENDSN NSESSSSSSS SSSLGRIAPL PPEAYPEHYG YGSKKGNEFA FKGKREGKAV 120 APRSNALIPG LAEREKNRPK CELCELSFTS RAQLEEHLQG KGHRKKAGGV NGGVARSQGH 180 RQQQHVRREV KPPDGPHCKL CKKIFTSLAQ KEEHEGGKWH KMRVDGKLAP SNKPYVT* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 11 | 32 | KRKSSTQREEEEENGDKKKKKK |
2 | 11 | 33 | KRKSSTQREEEEENGDKKKKKKR |
3 | 26 | 34 | DKKKKKKRL |
4 | 27 | 33 | KKKKKKR |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FO082263 | 0.0 | FO082263.1 Bathycoccus prasinos genomic : Chromosome_16. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007508674.1 | 1e-172 | predicted protein | ||||
TrEMBL | K8EQG3 | 1e-171 | K8EQG3_9CHLO; Uncharacterized protein | ||||
STRING | XP_007508674.1 | 1e-171 | (Bathycoccus prasinos) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP8441 | 3 | 3 |
Link Out ? help Back to Top | |
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Entrez Gene | 19011343 |