PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bathy15g02130

Organism

Bathycoccus prasinos

Taxonomic ID

41875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus

Family

MYB_related

Protein Properties

Length: 825aa MW: 94415.6 Da PI: 4.7115

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bathy15g02130	genome	ORCAE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.2	2.2e-09	738	788	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT....TTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg....kgRtlkqcksrwqkyl 48 g++++eE + +++v+ +G g Wk+I + +gRt+ ++k+++++++ Bathy15g02130 738 GKFSEEEVLAVIRGVETYGLGKWKLIRESSSdgvlLGRTPVDIKDKYRNLK 788 89***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.1E-11	730	794	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.748	732	792	IPR017930	Myb domain
SuperFamily	SSF46689	4.45E-11	734	789	IPR009057	Homeodomain-like
SMART	SM00717	2.6E-8	736	790	IPR001005	SANT/Myb domain
Pfam	PF00249	1.9E-7	737	788	IPR001005	SANT/Myb domain
CDD	cd11660	1.05E-14	739	788	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 825 aa Download sequence Send to blast
MSFEEEDNNE EEAMTIDIHQ KRPSHWVAEE LVHQGEESFQ FHREPRVGKR ESSLTLFRIV 60 KKLFFPSKTL MTQQQTSMKT RETIAREMQR EEDEEANDPA CIEMPSSIRG DYSLLWLQNL 120 LKEHEHESET TLDRDVVGAH VKNMCESFVY VSEDKNDPRN GGDALRESAR EVLEMCCVHL 180 GALKDINWED FSRRLQRLMP TEQFCSKDEV LNKIKLELFE ATRRKNHAIL DQKARKNSGK 240 FKKALRQFME RTMDKVNLEL ASGRATSIDQ LAMHHQDGWL SMRNAHVNWN RRKGMASVVG 300 MRKWPKCTDV IAEEGDLDVL VGAKSDDEVE EEEEEEEEPR RQRQQQNELI LSENRRKQPN 360 PRKNWSVLGK RKVNDVESSE EVTEDIPMPV LPPNKGRSKS TSRGKSSNVT PMLEELANAT 420 LQAANRENQQ RGEPNVISQP SVRGPSKKRG GAAPLSNSPA KPTVVLKNDG FDALKKALEE 480 REARKEAEAE KAKAIAEERA AEAAVEEEEE EEEEEEEEEE EEEEEEEEVD DGFARLRAEL 540 EKREEEKKKQ KPNRSGWAFV GKRKEPEKEE KETLDEDDEE EENDSDIIPT QQIGDDDDEM 600 QDADVIDSQP REKSNNVRGG FFKFFGNKTP SVAQHPVKQP SPTRSGKNVR ISSPREGGDD 660 DGDDLPQMQI DDDDDDDEDE PTAFNEQKIA LVPMVVQQQS YQSPPKPQQP KLRVQSPPHQ 720 YHQQRASPPQ QAARRVTGKF SEEEVLAVIR GVETYGLGKW KLIRESSSDG VLLGRTPVDI 780 KDKYRNLKSS DLKRVLTGVV PRSASYPFVE EHFEKVRRAA EEAH*

Sequence ? help Back to Top

Protein Sequence Length: 825 aa Download sequence Send to blast

MSFEEEDNNE EEAMTIDIHQ KRPSHWVAEE LVHQGEESFQ FHREPRVGKR ESSLTLFRIV  60
KKLFFPSKTL MTQQQTSMKT RETIAREMQR EEDEEANDPA CIEMPSSIRG DYSLLWLQNL  120
LKEHEHESET TLDRDVVGAH VKNMCESFVY VSEDKNDPRN GGDALRESAR EVLEMCCVHL  180
GALKDINWED FSRRLQRLMP TEQFCSKDEV LNKIKLELFE ATRRKNHAIL DQKARKNSGK  240
FKKALRQFME RTMDKVNLEL ASGRATSIDQ LAMHHQDGWL SMRNAHVNWN RRKGMASVVG  300
MRKWPKCTDV IAEEGDLDVL VGAKSDDEVE EEEEEEEEPR RQRQQQNELI LSENRRKQPN  360
PRKNWSVLGK RKVNDVESSE EVTEDIPMPV LPPNKGRSKS TSRGKSSNVT PMLEELANAT  420
LQAANRENQQ RGEPNVISQP SVRGPSKKRG GAAPLSNSPA KPTVVLKNDG FDALKKALEE  480
REARKEAEAE KAKAIAEERA AEAAVEEEEE EEEEEEEEEE EEEEEEEEVD DGFARLRAEL  540
EKREEEKKKQ KPNRSGWAFV GKRKEPEKEE KETLDEDDEE EENDSDIIPT QQIGDDDDEM  600
QDADVIDSQP REKSNNVRGG FFKFFGNKTP SVAQHPVKQP SPTRSGKNVR ISSPREGGDD  660
DGDDLPQMQI DDDDDDDEDE PTAFNEQKIA LVPMVVQQQS YQSPPKPQQP KLRVQSPPHQ  720
YHQQRASPPQ QAARRVTGKF SEEEVLAVIR GVETYGLGKW KLIRESSSDG VLLGRTPVDI  780
KDKYRNLKSS DLKRVLTGVV PRSASYPFVE EHFEKVRRAA EEAH*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FO082264	0.0	FO082264.1 Bathycoccus prasinos genomic : Chromosome_15.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007508808.1	0.0	unknown protein
TrEMBL	K8EPP8	0.0	K8EPP8_9CHLO; Uncharacterized protein
STRING	XP_007508808.1	0.0	(Bathycoccus prasinos)

Link Out ? help Back to Top
Entrez Gene	19011588