PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bathy15g01610 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 178aa MW: 20960.7 Da PI: 8.1785 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 27.6 | 6.9e-09 | 98 | 120 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C ksFs+ nLk H+r H Bathy15g01610 98 HECEVCEKSFSTAGNLKIHMRIH 120 78*******************99 PP | |||||||
2 | zf-C2H2 | 30.9 | 6.1e-10 | 126 | 148 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C+k F+++snLk+H+r H Bathy15g01610 126 YECDVCDKAFRHSSNLKVHMRIH 148 99*******************99 PP | |||||||
3 | zf-C2H2 | 28.7 | 3.2e-09 | 154 | 177 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C+ C+k F++ +L++H+rt H Bathy15g01610 154 YECHVCDKAFRQLGTLQKHMRTqH 177 99********************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.11E-12 | 95 | 129 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 5.0E-15 | 96 | 119 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF00096 | 1.2E-6 | 98 | 120 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 4.4E-5 | 98 | 120 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 15.604 | 98 | 125 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 100 | 120 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.8E-20 | 120 | 145 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.52E-21 | 120 | 172 | No hit | No description |
Pfam | PF00096 | 8.1E-8 | 126 | 148 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 5.5E-5 | 126 | 148 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 17.018 | 126 | 153 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 128 | 148 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 3.6E-16 | 146 | 175 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF00096 | 4.5E-7 | 154 | 177 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 6.6E-5 | 154 | 177 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 12.487 | 154 | 177 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 156 | 177 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 178 aa Download sequence Send to blast |
MRRRPRKNPH PRRAVNARTA LKGRGKEEPL VFVCSRIPDE DDDLEANHHQ IQKEEEEEEG 60 EDEDVKQLWR IMCVPCDDVV EQKQTRKDDK GVKRKRGHEC EVCEKSFSTA GNLKIHMRIH 120 TNEKPYECDV CDKAFRHSSN LKVHMRIHTN EKPYECHVCD KAFRQLGTLQ KHMRTQH* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mey_C | 6e-21 | 98 | 175 | 5 | 82 | CONSENSUS ZINC FINGER |
1mey_F | 6e-21 | 98 | 175 | 5 | 82 | CONSENSUS ZINC FINGER |
1mey_G | 6e-21 | 98 | 175 | 5 | 82 | CONSENSUS ZINC FINGER |
2i13_A | 3e-20 | 77 | 175 | 22 | 183 | Aart |
2i13_B | 3e-20 | 77 | 175 | 22 | 183 | Aart |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 1 | 6 | RRRPRK |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | FO082264 | 0.0 | FO082264.1 Bathycoccus prasinos genomic : Chromosome_15. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007508846.1 | 1e-129 | PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein | ||||
TrEMBL | K8EP05 | 1e-128 | K8EP05_9CHLO; PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein) | ||||
STRING | XP_007508846.1 | 1e-129 | (Bathycoccus prasinos) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP70 | 6 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G04240.1 | 5e-10 | C2H2 family protein |
Link Out ? help Back to Top | |
---|---|
Entrez Gene | 19011639 |