PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy15g01190
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family M-type_MADS
Protein Properties Length: 735aa    MW: 80637.5 Da    PI: 9.2006
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy15g01190genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF74.11.1e-23959151
                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
         SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                   +ri++++nrqvtf+kR+ng++KKA ELSvLCd ++a++i+ s++k + yss
  Bathy15g01190  9 ERIKDERNRQVTFTKRKNGLMKKAMELSVLCDCDIALVIVNSNNKAFQYSS 59
                   69********************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006627.684161IPR002100Transcription factor, MADS-box
SMARTSM004322.7E-33160IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.28E-27282IPR002100Transcription factor, MADS-box
CDDcd002658.78E-29275No hitNo description
PRINTSPR004041.8E-22323IPR002100Transcription factor, MADS-box
PfamPF003193.4E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-222338IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-223859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048440Biological Processcarpel development
GO:0048443Biological Processstamen development
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 735 aa     Download sequence    Send to blast
MGRKKIRIER IKDERNRQVT FTKRKNGLMK KAMELSVLCD CDIALVIVNS NNKAFQYSSS  60
AKDGEIESVL EKYRKAAMKK VVNNNNSGGG GNNAAASRGS AGGDGDGDGG GSGGGNGMTN  120
VAEKRSNKDL FKQHFAEQSL VDTVGERKEK KKDEKAPKGS LDTDDDEQDE DSGSESDDDE  180
EEEEKEKVQT EANNEKKQTT AKKRAKGNAE HEELAPEEIE KSKSRIVAPT VVTTKLVASK  240
KGGRVDVDEK REEEIPIRQA SLAAARFPSL QTTTKTTCGG NGDGKGGGKK KKKKKKQSTE  300
KIISSYDERS ARAARKLRLE AKKLIGSDCD DDDHDNDLRT KVDFDAEKTT IDELSSPMKK  360
ARRLKMWSSD NTREALARES SNAATTSKQK EGHRHHHHQT RPLSARGNGI GFFNGGFRLW  420
GGTGGDNNSK KRKNATAIDS SAHHSFNLDG ILSPTTTALA GLPSPMIYSP NTNNNNTNNN  480
NNDSTMTMFK SISGSGGLLS YFLGNNNVSN ANAKDDDRNA MGFYSSDMIV SPPTIPSLPI  540
RTMNIQKGDN KNDDDDGKKN DTTQNLTFPQ KRKLSVEIPP RGVPAVRSSS SAMMGELLKS  600
PTASFLFSPT PRKAGFISPG PLTALLHYDE MERRERLKKN GKLSSDFFAM PLDEEEQEQE  660
QEQEQELFFK EEEEDLGDTN KDDDEEKKKK KKTTKSGKSV VKKGSASRLP WMHVDDLWLF  720
GGATGSGDLM KGDR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A7e-27173169MEF2C
5f28_B7e-27173169MEF2C
5f28_C7e-27173169MEF2C
5f28_D7e-27173169MEF2C
6byy_A6e-27173169MEF2 CHIMERA
6byy_B6e-27173169MEF2 CHIMERA
6byy_C6e-27173169MEF2 CHIMERA
6byy_D6e-27173169MEF2 CHIMERA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1200206AKKRAKG
2289295KKKKKKK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822640.0FO082264.1 Bathycoccus prasinos genomic : Chromosome_15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007508752.10.0predicted protein
TrEMBLK8FCT60.0K8FCT6_9CHLO; Uncharacterized protein
STRINGXP_007508752.10.0(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP36561314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.31e-19MIKC_MADS family protein