PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bathy15g00930 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
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Family | C3H | ||||||||
Protein Properties | Length: 824aa MW: 94860.9 Da PI: 6.0245 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.4 | 4.4e-07 | 763 | 783 | 4 | 25 |
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 ++C ffa+ GtC+ G+ CkF+H Bathy15g00930 763 VPCVFFAK-GTCNKGNACKFSH 783 58******.************* PP | |||||||
2 | zf-CCCH | 27.1 | 7e-09 | 801 | 821 | 4 | 25 |
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 ++C ffa+ G CkyG++CkF+H Bathy15g00930 801 VPCVFFAK-GKCKYGETCKFSH 821 58******.************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.25.40.20 | 8.2E-13 | 228 | 403 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 9.41 | 228 | 328 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 6.53E-14 | 229 | 429 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 1.16E-8 | 260 | 398 | No hit | No description |
Pfam | PF12796 | 3.5E-8 | 260 | 346 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50103 | 14.464 | 759 | 786 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.0E-5 | 760 | 785 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.32E-5 | 760 | 784 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.812 | 797 | 823 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.27E-5 | 798 | 822 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.7E-5 | 798 | 823 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.4E-6 | 802 | 821 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.5E-4 | 802 | 822 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 824 aa Download sequence Send to blast |
MTSSSTSPPP REEKGKEKEG LVKKLMKFVK EHQSGKEEEE EEEDPTSSSS FFPLWEHLIQ 60 DEDVFSHVLS FLNPTERKFV THVSRETRRV MLKTLKMPIV PVQRYRSNAQ KNQLKKDQKK 120 WSEEEAGRKI NLKSVDWKTY SPWLRLAKDT STIPDKFTIK ECRGTGQLEI ALDFCVMDPP 180 KEIEIFVEDG TISEEYFVHN VAKTNEISLL KWAREVKHLS WDSRISRVAT EQGNVQMLEY 240 VVRQFARDKS LYENDYDWEL HEAAHKGHLD CVRFLLEHVG GFQKTRLKGG YWRETEGEFI 300 IYHAAGASQL HVIEYLLSQG SPVTSDALVS CANSGSLECL KYLRENSIRR VDWTGDLEIV 360 KYCVNDGCPL EVPLDRQPEP DVITTAVDFG HLNVVRFLRE ERGSGLSLDI EHIMKALSMG 420 NVELLKYIWF HQTFPIPEDF PGLIWKLWVQ GYHETLDPNF PLCWLLRRKK QTEHFLCVKF 480 LYEEVQIPMS EDAYWRIYEL ALTWGDCALL EWVFEKIKKD FSDGYDPRST DIPLPWPEPH 540 HCEYAAGKGY LDCLQFLHKI AKFRFCTHTS EPMDLDTIKV ALRNYQPECA RYAFEMEAYV 600 VSRENKRNYS TGESYVVSRE NNYSKQHKND VRKQVELLES IAQSLTFGEL EEAREVMRKD 660 FEGCERCDDI HLDEHFHLFR FENEWFTSSD DESYGSEDLS DEDIESVTQD LPDLSRVLYP 720 RSGRNRNNNG RGGRGGRGGR GGRGRGGGRH AISGEAARDT SNVPCVFFAK GTCNKGNACK 780 FSHHASSAAE GAGEVVDTSN VPCVFFAKGK CKYGETCKFS HQT* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 740 | 747 | GGRGRGGG |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FO082264 | 0.0 | FO082264.1 Bathycoccus prasinos genomic : Chromosome_15. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007508850.1 | 0.0 | PREDICTED: similar to predicted protein | ||||
TrEMBL | K8EPG6 | 0.0 | K8EPG6_9CHLO; Uncharacterized protein | ||||
STRING | XP_007508850.1 | 0.0 | (Bathycoccus prasinos) |
Link Out ? help Back to Top | |
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Entrez Gene | 19011403 |