PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy15g00930
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family C3H
Protein Properties Length: 824aa    MW: 94860.9 Da    PI: 6.0245
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy15g00930genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.44.4e-07763783425
                    ---SGGGGTS--TTTTT-SS-S CS
        zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                    ++C ffa+ GtC+ G+ CkF+H
  Bathy15g00930 763 VPCVFFAK-GTCNKGNACKFSH 783
                    58******.************* PP

2zf-CCCH27.17e-09801821425
                    ---SGGGGTS--TTTTT-SS-S CS
        zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                    ++C ffa+ G CkyG++CkF+H
  Bathy15g00930 801 VPCVFFAK-GKCKYGETCKFSH 821
                    58******.************* PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.208.2E-13228403IPR020683Ankyrin repeat-containing domain
PROSITE profilePS502979.41228328IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484036.53E-14229429IPR020683Ankyrin repeat-containing domain
CDDcd002041.16E-8260398No hitNo description
PfamPF127963.5E-8260346IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5010314.464759786IPR000571Zinc finger, CCCH-type
SMARTSM003567.0E-5760785IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-5760784IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.812797823IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-5798822IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-5798823IPR000571Zinc finger, CCCH-type
PfamPF006428.4E-6802821IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-4802822IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 824 aa     Download sequence    Send to blast
MTSSSTSPPP REEKGKEKEG LVKKLMKFVK EHQSGKEEEE EEEDPTSSSS FFPLWEHLIQ  60
DEDVFSHVLS FLNPTERKFV THVSRETRRV MLKTLKMPIV PVQRYRSNAQ KNQLKKDQKK  120
WSEEEAGRKI NLKSVDWKTY SPWLRLAKDT STIPDKFTIK ECRGTGQLEI ALDFCVMDPP  180
KEIEIFVEDG TISEEYFVHN VAKTNEISLL KWAREVKHLS WDSRISRVAT EQGNVQMLEY  240
VVRQFARDKS LYENDYDWEL HEAAHKGHLD CVRFLLEHVG GFQKTRLKGG YWRETEGEFI  300
IYHAAGASQL HVIEYLLSQG SPVTSDALVS CANSGSLECL KYLRENSIRR VDWTGDLEIV  360
KYCVNDGCPL EVPLDRQPEP DVITTAVDFG HLNVVRFLRE ERGSGLSLDI EHIMKALSMG  420
NVELLKYIWF HQTFPIPEDF PGLIWKLWVQ GYHETLDPNF PLCWLLRRKK QTEHFLCVKF  480
LYEEVQIPMS EDAYWRIYEL ALTWGDCALL EWVFEKIKKD FSDGYDPRST DIPLPWPEPH  540
HCEYAAGKGY LDCLQFLHKI AKFRFCTHTS EPMDLDTIKV ALRNYQPECA RYAFEMEAYV  600
VSRENKRNYS TGESYVVSRE NNYSKQHKND VRKQVELLES IAQSLTFGEL EEAREVMRKD  660
FEGCERCDDI HLDEHFHLFR FENEWFTSSD DESYGSEDLS DEDIESVTQD LPDLSRVLYP  720
RSGRNRNNNG RGGRGGRGGR GGRGRGGGRH AISGEAARDT SNVPCVFFAK GTCNKGNACK  780
FSHHASSAAE GAGEVVDTSN VPCVFFAKGK CKYGETCKFS HQT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1740747GGRGRGGG
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822640.0FO082264.1 Bathycoccus prasinos genomic : Chromosome_15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007508850.10.0PREDICTED: similar to predicted protein
TrEMBLK8EPG60.0K8EPG6_9CHLO; Uncharacterized protein
STRINGXP_007508850.10.0(Bathycoccus prasinos)