PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy15g00050
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family HSF
Protein Properties Length: 478aa    MW: 53351.5 Da    PI: 5.835
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy15g00050genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind89.34.7e-28341242101
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                    Fl k+++++++++++++isw++ng++f v++++ +++k Lp++FkhsnfaSFvRQLn YgF+k ++++          eF    F+k+k ell+++
  Bathy15g00050  34 FLWKTWNLVSNPANDDVISWTANGRTFTVWKPDLLEEKYLPETFKHSNFASFVRQLNNYGFRKCHSDR---------FEFGVTGFEKNKPELLTTL 120
                    99***************************************************************999.........67***************** PP

                    XXXX CS
   HSF_DNA-bind  98 krkk 101
                    kr++
  Bathy15g00050 121 KRNE 124
                    *987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.4E-2929117IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467856.19E-2630122IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.4E-3330123IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-143457IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.1E-2434123IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-147284IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-148597IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MDTDEKVSAQ PGSLPPMSAA AGGGAFATIN VSPFLWKTWN LVSNPANDDV ISWTANGRTF  60
TVWKPDLLEE KYLPETFKHS NFASFVRQLN NYGFRKCHSD RFEFGVTGFE KNKPELLTTL  120
KRNEAPRMKS KTEFAKDTKK KESKTSIMKA TPTTSPRQGR ALPDSNEAGG EERTTTTTGR  180
RGSGREKGAP SGGHTALELG AFGNLTEEVD QLKRDRMVLL KEVMRLRLEQ DDTATQMRMM  240
EQRVQQNEQF SAQMRSLLET LQQNPKLAME FGEQLNNVSR FAPRKRRQSI PLLGGGERNE  300
GNTINGNYNN NNGNSDHESQ MLLETSTNHA NHLRLQEIID EQEREPSPKM FPNGNFALVP  360
TPDKDTGLAQ FTWQEIMEAN TPSDTSTESL RQMVEGMSKE EEVGKDQQAF LSSILERTNS  420
GLSSDRIAQE LGAVNDSTLP SARSLENQLS LSFLDSEEMT NLVNDMKLSQ KKGGEKK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B9e-181712212128Heat shock factor protein 1
5d5v_B9e-181712212128Heat shock factor protein 1
5d5v_D9e-181712212128Heat shock factor protein 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822640.0FO082264.1 Bathycoccus prasinos genomic : Chromosome_15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007508936.10.0predicted protein
TrEMBLK8EP670.0K8EP67_9CHLO; Uncharacterized protein
STRINGXP_007508936.10.0(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP5221523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.11e-35heat shock transcription factor A1D