PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bathy15g00050 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
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Family | HSF | ||||||||
Protein Properties | Length: 478aa MW: 53351.5 Da PI: 5.835 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 89.3 | 4.7e-28 | 34 | 124 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 Fl k+++++++++++++isw++ng++f v++++ +++k Lp++FkhsnfaSFvRQLn YgF+k ++++ eF F+k+k ell+++ Bathy15g00050 34 FLWKTWNLVSNPANDDVISWTANGRTFTVWKPDLLEEKYLPETFKHSNFASFVRQLNNYGFRKCHSDR---------FEFGVTGFEKNKPELLTTL 120 99***************************************************************999.........67***************** PP XXXX CS HSF_DNA-bind 98 krkk 101 kr++ Bathy15g00050 121 KRNE 124 *987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.4E-29 | 29 | 117 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 6.19E-26 | 30 | 122 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 4.4E-33 | 30 | 123 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.7E-14 | 34 | 57 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.1E-24 | 34 | 123 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.7E-14 | 72 | 84 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.7E-14 | 85 | 97 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 478 aa Download sequence Send to blast |
MDTDEKVSAQ PGSLPPMSAA AGGGAFATIN VSPFLWKTWN LVSNPANDDV ISWTANGRTF 60 TVWKPDLLEE KYLPETFKHS NFASFVRQLN NYGFRKCHSD RFEFGVTGFE KNKPELLTTL 120 KRNEAPRMKS KTEFAKDTKK KESKTSIMKA TPTTSPRQGR ALPDSNEAGG EERTTTTTGR 180 RGSGREKGAP SGGHTALELG AFGNLTEEVD QLKRDRMVLL KEVMRLRLEQ DDTATQMRMM 240 EQRVQQNEQF SAQMRSLLET LQQNPKLAME FGEQLNNVSR FAPRKRRQSI PLLGGGERNE 300 GNTINGNYNN NNGNSDHESQ MLLETSTNHA NHLRLQEIID EQEREPSPKM FPNGNFALVP 360 TPDKDTGLAQ FTWQEIMEAN TPSDTSTESL RQMVEGMSKE EEVGKDQQAF LSSILERTNS 420 GLSSDRIAQE LGAVNDSTLP SARSLENQLS LSFLDSEEMT NLVNDMKLSQ KKGGEKK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 9e-18 | 17 | 122 | 12 | 128 | Heat shock factor protein 1 |
5d5v_B | 9e-18 | 17 | 122 | 12 | 128 | Heat shock factor protein 1 |
5d5v_D | 9e-18 | 17 | 122 | 12 | 128 | Heat shock factor protein 1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FO082264 | 0.0 | FO082264.1 Bathycoccus prasinos genomic : Chromosome_15. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007508936.1 | 0.0 | predicted protein | ||||
TrEMBL | K8EP67 | 0.0 | K8EP67_9CHLO; Uncharacterized protein | ||||
STRING | XP_007508936.1 | 0.0 | (Bathycoccus prasinos) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP522 | 15 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32330.1 | 1e-35 | heat shock transcription factor A1D |
Link Out ? help Back to Top | |
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Entrez Gene | 19011404 |