PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy14g03400
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family MYB
Protein Properties Length: 1024aa    MW: 117985 Da    PI: 4.9043
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy14g03400genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.39.7e-10784832148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqkyl 48 
                      r +WT e+d  l   v++ G  +W+  ar ++  g t+ qck+r++k++
    Bathy14g03400 784 RSKWTSEDDCALQTFVQECGQARWNECARFLPeYGHTATQCKHRFLKLM 832
                      789*******************************************986 PP
2Myb_DNA-binding24.37.2e-08842915147
                      TSSS-HHHHHHHHHHHHHTTTT...........................-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...........................tWktIartmgkgRtlkqcksrwqky 47 
                      +g+WT+eEde l+  v    ++                            W+++a++m ++R +kqc++rw + 
    Bathy14g03400 842 KGKWTKEEDEELKAIVLGEQKDgeeedeedqeeerekeknnnnaesnaiPWSLVAKKMSTNRRDKQCRERWTNI 915
                      79**************88887799***********************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007174.2532665IPR001005SANT/Myb domain
PROSITE profilePS500905.993681778IPR017877Myb-like domain
SMARTSM007173.4685780IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-8689728IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-8765789IPR009057Homeodomain-like
SuperFamilySSF466898.98E-16765836IPR009057Homeodomain-like
PROSITE profilePS5129411.27779836IPR017930Myb domain
SMARTSM007174.9E-9783834IPR001005SANT/Myb domain
CDDcd001674.21E-6786832No hitNo description
PfamPF139212.2E-8787853No hitNo description
Gene3DG3DSA:1.10.10.601.7E-11790843IPR009057Homeodomain-like
PROSITE profilePS500909.489837916IPR017877Myb-like domain
SMARTSM007171.7E-8841918IPR001005SANT/Myb domain
CDDcd001670.00237844916No hitNo description
Gene3DG3DSA:1.10.10.602.5E-12844920IPR009057Homeodomain-like
SuperFamilySSF466897.65E-11895990IPR009057Homeodomain-like
SMARTSM007171.7931987IPR001005SANT/Myb domain
PROSITE profilePS500905.599932985IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.1E-7932988IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1024 aa     Download sequence    Send to blast
MQPLLSKNND NDDDDDDDDD DDDDEKRRRK QRRREKKKKK KKEMKKEEKR KKKEMKKREK  60
KTTTIQKKKT TAEEEEEEEE EEEEEEEEEE EEEEKHHRQQ KRRRYDHHHH HRHRKGSSLP  120
VVVGGAKRKR IDVSDVEEAL EVELEEEEEE EEEEEEEEEE EEKEKEGNEE EKPVLTKTYD  180
ITAWKEEIAK HKRSSRQTTT RRRKNDDDDD GALGGTSARS DTTRAELAIA DNTDKSGGGG  240
ENAINDGTHK NKRFLLRVPL WAQKSALAQS AVSKAFKRET IISTSDDEKD QREEASPVPP  300
SAATGGGGAS KASSFEQALR ANRATQARAK EMLESIDALI ERDALKIEEI KELWQSRKHQ  360
QTQSEDEEEE EEEEEEEKAK EEQKNNFAAA DASSSLADGD GGGGDSDGKN AFSRQRPRRR  420
NDDCDEELEA IANNVGKILR RKMGRPPSKK SNKDNISATD NDEINNHWSS PSASAYFQVV  480
GIASELENDD DDKLSPKALL PNDINNGNND SAFARNVERK IPLHFNDASS NGFKPWSEKD  540
DLALTEGVRL YLLEKRRLRK QVDLEELAGE KIIPVEDILT DVSRGWQSVW ENCSSRRSSS  600
TTTPTSIDDW SAVRNLCVFK KKTGADDGNN KEREEDDDDD VDHNKLALSR TPDDLRLRWI  660
HAVDPRIAST IDSSSEKKTA TSSSNAALWS EEEDTFLASL VEEDALEEET GGLIEKRKWF  720
RVANNLNVHM KQRSRSGTTK QGDDVDDDAG EEKKEENLRR ELLLRSPFQC LHRYQTILNK  780
NITRSKWTSE DDCALQTFVQ ECGQARWNEC ARFLPEYGHT ATQCKHRFLK LMQNNSEKEY  840
KKGKWTKEED EELKAIVLGE QKDGEEEDEE DQEEEREKEK NNNNAESNAI PWSLVAKKMS  900
TNRRDKQCRE RWTNILQPSL LNEQFGTATG MKRKFTPKED AMLLVLHANF IDKKERRKDW  960
SVFESTEVLP GRSVKQCKQR VATLLKKKKE VEIRERLERE ITKEKNKGSG MQRLVFWLQQ  1020
PSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-117819883158MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-117819883158MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12430EKRRRKQ
22541KRRRKQRRREKKKKKKK
32637RRRKQRRREKKK
43240RREKKKKKK
53242RREKKKKKKKE
63541KKKKKKK
73552KKKKKKKEMKKEEKRKKK
83645KKKKKKEMKK
93852KKKKEMKKEEKRKKK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822650.0FO082265.1 Bathycoccus prasinos genomic : Chromosome_14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007509130.10.0predicted protein
TrEMBLK8EMY30.0K8EMY3_9CHLO; Uncharacterized protein
STRINGXP_007509130.10.0(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP42351111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.13e-14myb domain protein 4r1