PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bathy14g03300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
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Family | AP2 | ||||||||
Protein Properties | Length: 198aa MW: 22706.4 Da PI: 8.638 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 31.8 | 3.4e-10 | 86 | 130 | 1 | 50 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaar 50 s+y+GV++ ++rW+A+ r + k slg f+ + eAa+a+++++ Bathy14g03300 86 SKYRGVHQTFPTQRWEAQFRR------QgKPTSLGCFDEEGEAARAYDRMM 130 89****************666......34**********66*******986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.4E-6 | 86 | 130 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-9 | 86 | 131 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.6E-7 | 87 | 131 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 10.046 | 87 | 127 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MSPEAFTNLP SIISKKKSID SHSDWKILYG YYGSNMIISW PSDPMIDESS DLHQLKVENR 60 GAGANSQVPC KVSKQRGASK GRTYTSKYRG VHQTFPTQRW EAQFRRQGKP TSLGCFDEEG 120 EAARAYDRMM IWSELHPFQS STEVKDAITR LSSISLNFHY LEYEEDIDAL RQISQEKLIQ 180 ELRKQGRLQQ NSKHDLQ* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FO082265 | 1e-148 | FO082265.1 Bathycoccus prasinos genomic : Chromosome_14. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007509360.1 | 1e-147 | predicted protein | ||||
TrEMBL | K8ENL8 | 1e-146 | K8ENL8_9CHLO; Uncharacterized protein | ||||
STRING | XP_007509360.1 | 1e-147 | (Bathycoccus prasinos) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP2746 | 14 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G39250.1 | 1e-09 | AP2 family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 19011807 |