PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bathy14g02150 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
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Family | NF-YB | ||||||||
Protein Properties | Length: 70aa MW: 7765.82 Da PI: 4.3094 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 89.3 | 4e-28 | 21 | 69 | 1 | 49 |
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtse 49 vreqdrflPian+srimkk+lPanaki+kdaketvqecvsefisf+tse Bathy14g02150 21 VREQDRFLPIANISRIMKKALPANAKIAKDAKETVQECVSEFISFITSE 69 69*********************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 4.3E-26 | 20 | 69 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.99E-17 | 22 | 69 | IPR009072 | Histone-fold |
Pfam | PF00808 | 4.2E-17 | 27 | 69 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 70 aa Download sequence Send to blast |
MPAYNEGEVE IDEDDFKCAA VREQDRFLPI ANISRIMKKA LPANAKIAKD AKETVQECVS 60 EFISFITSE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 4e-22 | 21 | 69 | 1 | 49 | Transcription factor HapC (Eurofung) |
4g92_B | 4e-22 | 21 | 69 | 1 | 49 | Transcription factor HapC (Eurofung) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. May regulate the expression of photosynthetic genes, and may be involved in chloroplast and amyloplast development. {ECO:0000269|PubMed:14617083}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FO082265 | 1e-114 | FO082265.1 Bathycoccus prasinos genomic : Chromosome_14. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007509217.1 | 1e-43 | predicted protein | ||||
Swissprot | O23310 | 2e-27 | NFYB3_ARATH; Nuclear transcription factor Y subunit B-3 | ||||
Swissprot | Q5QMG3 | 3e-27 | NFYB2_ORYSJ; Nuclear transcription factor Y subunit B-2 | ||||
TrEMBL | K8ENY2 | 3e-42 | K8ENY2_9CHLO; Uncharacterized protein | ||||
STRING | XP_007509217.1 | 5e-43 | (Bathycoccus prasinos) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP2023 | 16 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14540.1 | 7e-30 | nuclear factor Y, subunit B3 |
Link Out ? help Back to Top | |
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Entrez Gene | 19011976 |
Publications ? help Back to Top | |||
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