PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bathy14g01030 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
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Family | C3H | ||||||||
Protein Properties | Length: 75aa MW: 7815.65 Da PI: 8.9524 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 42 | 1.6e-13 | 22 | 47 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC+ f++ GtC++G+ C FaH+ Bathy14g01030 22 YKTRLCNSFRQEGTCRFGSACLFAHS 47 9************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 2.3E-16 | 19 | 52 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.29E-11 | 19 | 53 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.732 | 21 | 49 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.9E-7 | 21 | 48 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-10 | 22 | 47 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 75 aa Download sequence Send to blast |
MAALEQGGVH AKTINARDRP RYKTRLCNSF RQEGTCRFGS ACLFAHSSEE LRRTLTDGGA 60 DGSRDVSGLG GGGG* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FO082265 | 1e-122 | FO082265.1 Bathycoccus prasinos genomic : Chromosome_14. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007509102.1 | 2e-47 | unknown protein | ||||
TrEMBL | K8ENM2 | 6e-46 | K8ENM2_9CHLO; Uncharacterized protein | ||||
STRING | XP_007509102.1 | 9e-47 | (Bathycoccus prasinos) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP3623 | 13 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35430.1 | 4e-08 | C3H family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 19011687 |