PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy13g01160
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family WRKY
Protein Properties Length: 723aa    MW: 78868.5 Da    PI: 9.2852
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy13g01160genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY72.74.7e-23758260
                   --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
           WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60
                   +Dg++WrKYGqK++k++ fprsYYrCt ++Cp++k+ve           +Ye++Hnhek
  Bathy13g01160  7 KDGFKWRKYGQKNIKSASFPRSYYRCTKPDCPARKQVENGL-------AKYENQHNHEK 58
                   8*************************************998.......89*******85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007741.1E-23658IPR003657WRKY domain
SuperFamilySSF1182901.11E-19659IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.1E-20659IPR003657WRKY domain
PfamPF031061.7E-18756IPR003657WRKY domain
PROSITE profilePS5081120.013859IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:1900150Biological Processregulation of defense response to fungus
GO:1900425Biological Processnegative regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 723 aa     Download sequence    Send to blast
MIKHDIKDGF KWRKYGQKNI KSASFPRSYY RCTKPDCPAR KQVENGLAKY ENQHNHEKPS  60
LLLLSQQKNK SQQQKDIIGT PNKVEKKKSK GKNQPILARM AVVRRPPGSI SSLGGVGGCY  120
KKIKAPKAAR KFYHDDDDDD GGNDGGNDRP PPHPLVAALR ALSPKLARRE EENNEKREDG  180
NTNENNNNRD DSSKKRSDGE MAAAIFSMEE APLSPGYWDK AEGSYFDDTG NPHGGGGENI  240
KTQARFGTTA VTGSATKKQQ RPKNIEVSTN HGYFGGGGGG GSGGITGFLT SPRLTGIVSN  300
VFTGAKDFCE FRQMLSPDEC NEGKKKKKKE KKQVGGTNAA QPFESDNERN DDEGEEGEDE  360
EENETKKVED PGPLVYQQSP KCARKKERFS SAAMEEEEDV DVVNIDATPE KFGKKDFKAI  420
AKSRRGLLPF IEEQGMLLDK DESGSALSRE ETVLHAFSKR EVHNNPLQSP KGAKTSFKDA  480
KKANKILSCS TASGGKISKK KSKKSKLTSS EALAAETYCE AILKGMRHEE ASAIAAQKVR  540
EMNEKTQRLK ELARERKKAR SLVPPSMPPQ QGSGALGKNN SFSRLYEADV YDNSKTNSYQ  600
VSPAVSDHGE GQQPAANIAV APALNNSNVD TYTAHDTNNN NANGDNKTTN GGGGGGGGLW  660
SPIWQMEKAV SQFCSSYFPN LGEDDLNLPD PLGDFEALSP PRQKENGGGH ASGGSRMIWW  720
TR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-146591474WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1323331KKKKKKEKK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822660.0FO082266.1 Bathycoccus prasinos genomic : Chromosome_13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007509651.10.0predicted protein
TrEMBLK8ENB80.0K8ENB8_9CHLO; Uncharacterized protein
STRINGXP_007509651.10.0(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP4691626
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.11e-15WRKY DNA-binding protein 4