PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy12g02690
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family C2H2
Protein Properties Length: 416aa    MW: 47904.1 Da    PI: 8.7669
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy12g02690genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.27.8e-07262284123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y C+ Cg++F+r+++ k+H  +H
  Bathy12g02690 262 YGCNVCGRRFNRPYEWKVHVLKH 284
                    67******************999 PP
2zf-C2H213.60.00021341363123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C +C k F ++  L+ H++tH
  Bathy12g02690 341 FQCAICFKAFATNFILTAHLKTH 363
                    89********************9 PP
3zf-C2H214.20.00013368391123
                    EEETTTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                    ++C  C+ s++rk  L+ H  + H
  Bathy12g02690 368 HVCDMCDASYTRKFKLQAHREKvH 391
                    79*****************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.28E-12232284No hitNo description
Gene3DG3DSA:3.30.160.605.7E-8233262IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015713.131234261IPR007087Zinc finger, C2H2
SMARTSM003550.39234256IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280236256IPR007087Zinc finger, C2H2
SMARTSM003550.031262284IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.933262289IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.3E-6263284IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280264284IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.7E-6338365IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.82E-8339379No hitNo description
PROSITE profilePS5015711.011341368IPR007087Zinc finger, C2H2
SMARTSM003550.29341363IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280343363IPR007087Zinc finger, C2H2
PROSITE profilePS501578.642368391IPR007087Zinc finger, C2H2
SMARTSM003550.1368391IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280370391IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MSSSRRKSRP PKRVHFELAA IAAQHIIRER EQELKRRREE QKSLMSVTSF NDAVVAAVAK  60
WWDAAAEVET VEDDLRKKAK VVKVRLLEGG GTAKGEEEEE EKEDSSDRFC AFVEGGKCTT  120
ALLERAGKGG GMKDENKRLC KFPKDFLRLR EEEDEANEEI TEEERRVSMK AYARKRCCKR  180
CYNALYRSMR KELQMGSNKD EMLLDNPSDE IVIAQQQQRK PSVKDKVFAP TRTYFCSRCN  240
LECSSRYHLR THERTHTGDR PYGCNVCGRR FNRPYEWKVH VLKHATNGRH KEVARAFEQN  300
LELGMEKVNG DPGVQSLRPP LPQRYFDIDK PPPKDDANRP FQCAICFKAF ATNFILTAHL  360
KTHLNARHVC DMCDASYTRK FKLQAHREKV HGVSSHQESD RNTDGEKESE SDSQS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1164175RRVSMKAYARKR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822670.0FO082267.1 Bathycoccus prasinos genomic : Chromosome_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007510008.10.0unnamed protein product
TrEMBLK8FBU70.0K8FBU7_9CHLO; Unnamed protein product
STRINGXP_007510008.10.0(Bathycoccus prasinos)