PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy12g02110
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family MYB
Protein Properties Length: 713aa    MW: 77069.9 Da    PI: 10.3799
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy12g02110genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.71.5e-09567611348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +W++eEd+l   +v q G++ W++Ia  +  g+t kq   rw++yl
    Bathy12g02110 567 SWSQEEDDLVQVLVSQVGPKKWALIAGQLS-GKTQKQAYARWRDYL 611
                      7*****************************.************997 PP
2Myb_DNA-binding33.78.3e-11619659345
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +WT +E+  l+d+ +  G+  W+  ar m+ gR+++ +k+r++
    Bathy12g02110 619 PWTRWEETHLLDCQAHIGNQ-WAILARFMP-GRSPNAIKNRFH 659
                      8*****************99.*********.**********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.227560615IPR017930Myb domain
SuperFamilySSF466892.92E-22563658IPR009057Homeodomain-like
SMARTSM007173.4E-7564613IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-15567618IPR009057Homeodomain-like
CDDcd001671.96E-7567611No hitNo description
PfamPF002492.0E-8567611IPR001005SANT/Myb domain
SMARTSM007173.1E-8616664IPR001005SANT/Myb domain
PROSITE profilePS512949.439616666IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.3E-13619664IPR009057Homeodomain-like
CDDcd001672.17E-6619662No hitNo description
PfamPF002498.3E-9619659IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 713 aa     Download sequence    Send to blast
MTPSSTAKGG GAGKKASTNT TTKTTGEQQR KRNQNVSDAM NSAAPPTLAQ LLTAAGVPVN  60
PLDGSTTQQQ LLQFQQQQNA AVNFAAAAAL TLSGVTTQLK SFGNNTSGLV GGPANSGGQP  120
ASPSFWNQFY AQQALVGSIY GQQQQLQAAQ QALSNGANLN NERLSFLSNF STGMGGGAQP  180
TMSNRTQSSG GNAIFDNEDL KELLKMGTAA RTQQLQQQLF GASAGIGEIN SNDAAKKRKL  240
SNVNTKKKAG QNTNNNKNNK RKQPDSAGYQ QPGSRGNSAF SPFANSAGDG NNIFTSSELR  300
KVASLQHQKK KKRGADGKKN SKDNSKDNKK NSKDNKATSQ EKKPGRGKGK KQEETNQKTM  360
QLADAAMSFG GEQISDMKND RKILAEVMKL QEGYLKETPE EREKREKDDA AKKMKQLSTR  420
GHTARATEKE ELYKSIVDVD GNLLKPDVLE RFEANANKMT QLNKEHEEER KKAGLGGMKN  480
DGAVTDLAQA AAQKITGASD DVMAKVRGIL EEELSDAETD IAEGDETGEL DSQAAKVKND  540
DAGTEEKKSG ASSDKVPGKD IKVRSRSWSQ EEDDLVQVLV SQVGPKKWAL IAGQLSGKTQ  600
KQAYARWRDY LQPGLTSRPW TRWEETHLLD CQAHIGNQWA ILARFMPGRS PNAIKNRFHA  660
TKRKMERNVG AFTNEKGDFT KLTPALTSDK ELIKKVVAET KAASKKASQT RS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-195686647103C-Myb DNA-Binding Domain
1msf_C2e-195686647103C-Myb DNA-Binding Domain
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822670.0FO082267.1 Bathycoccus prasinos genomic : Chromosome_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007509880.10.0predicted protein
TrEMBLK8F2H50.0K8F2H5_9CHLO; Uncharacterized protein
STRINGXP_007509880.10.0(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1516114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.22e-22myb domain protein 3r-5