PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy12g01210
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family AP2
Protein Properties Length: 369aa    MW: 41863.7 Da    PI: 8.8628
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy12g01210genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.74.4e-11168216152
            AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkk 52 
                    s+++GV+ +k++grW+A+I+        +k+++lg +  ++ Aa+a +  + k
  Bathy12g01210 168 SRFRGVTKHKRSGRWEAHIWIrD----SKKQVYLGGYSNEQHAAEAFDLVAMK 216
                    789******************22....35**********99999999987765 PP
2AP244.53.8e-14266316155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    sgy+GV+ ++ +grW+A+I  p   g +k+++lg f t+ eAa+a++    +l+g
  Bathy12g01210 266 SGYRGVTLHP-TGRWEARIGLP---GGQKHVYLGLFETEVEAARAYDVKLVELRG 316
                    89********.9*********8...326**********99********9999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.5E-9168217IPR016177DNA-binding domain
PfamPF008473.1E-6168216IPR001471AP2/ERF domain
CDDcd000184.51E-13168233No hitNo description
Gene3DG3DSA:3.30.730.101.8E-11169232IPR001471AP2/ERF domain
PROSITE profilePS5103213.959169231IPR001471AP2/ERF domain
SMARTSM003801.3E-13169237IPR001471AP2/ERF domain
PfamPF008471.0E-7266315IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-17266326IPR016177DNA-binding domain
CDDcd000181.27E-19266326No hitNo description
PROSITE profilePS5103216.608267324IPR001471AP2/ERF domain
SMARTSM003802.5E-23267330IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.0E-17268324IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MREYEDTHRV SHACLPLIPT ANDWHTAVAV LATSEQQQHQ QQHKKGRKKT TSPRREEGGK  60
EEDEEEGAEG LRKKTKKKRK KNEGEAEDKD DEEEEDEIEK VDAATLAANM KKVPLIERDA  120
RGGGDPNFHG LRESGEEQGR QEQQQEHEQQ QQQQQQQQEK EATPPHSSRF RGVTKHKRSG  180
RWEAHIWIRD SKKQVYLGGY SNEQHAAEAF DLVAMKCKLM KNGRKIKLNY PASKYQDLQG  240
YLLSTPLEEL IMAVRRQSQG FARGSSGYRG VTLHPTGRWE ARIGLPGGQK HVYLGLFETE  300
VEAARAYDVK LVELRGPSMA TNFAISNYAE SIKLFYEENP AAVNESTEST PSPKEAKSKK  360
MKRKPAPH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17079LRKKTKKKRK
27280KKTKKKRKK
37680KKRKK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822670.0FO082267.1 Bathycoccus prasinos genomic : Chromosome_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007510012.10.0floral homeotic protein
TrEMBLK8ELK50.0K8ELK5_9CHLO; Floral homeotic protein
STRINGXP_007510012.10.0(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP561657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.23e-42AP2 family protein