PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bathy11g03340

Organism

Bathycoccus prasinos

Taxonomic ID

41875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus

Family

C2H2

Protein Properties

Length: 1041aa MW: 116967 Da PI: 8.8069

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bathy11g03340	genome	ORCAE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12	0.00063	376	397	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C++Cgk+++ + L+ H r++ Bathy11g03340 376 TCEKCGKVCKGQGPLTMHVRSC 397 8*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51667	12.097	306	352	IPR014977	WRC domain
PROSITE profile	PS50982	9.907	830	905	IPR001739	Methyl-CpG DNA binding
Gene3D	G3DSA:3.30.890.10	9.5E-12	833	885	IPR001739	Methyl-CpG DNA binding
Pfam	PF01429	4.2E-7	838	888	IPR001739	Methyl-CpG DNA binding
SuperFamily	SSF54171	2.42E-7	839	885	IPR016177	DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1041 aa Download sequence Send to blast
MSCFLNMVTS SDVIVPRREE QQHQHHHHQY YNGGEYGGGM MTTSVAPRIR VEIANGIRKG 60 EKFITELSGC ERVRDFVSMK LCKNEYLRGK EVKVYLDEYE LLGDTSVDVL GHEDKIFVVV 120 CDDEGDEMEE EEEVDDGFAR VRAELEKREE EKKKEEKKKK KKKTTLNMKK ETNNRGTRIV 180 NQQHERKQKK HNLEHSLRMA PTMVTMKKVQ KKMATVPSKK DERPRLAAQM VYASSSEEDD 240 DDGDSHGLEE LSSDEDGGDP EFFVRNVGVQ KSSRSSRKNG TPNSKEKRAE LPKKKNWQSR 300 LLRNAEKPDW MCRGAGFKWS CTEKKAPGKS VCEKHSRMPK WSKAPVAPPP PPAKKAGKTL 360 EKLENARKAA ASSALTCEKC GKVCKGQGPL TMHVRSCKGS DSSIAASPAA DETKKGGQPP 420 LLRGKRVPIK LLRKCARNGG VKSILAELVV NYRIGARSNV PVTAMVPAQT PVATAIAPIL 480 ASVADADKKL SDLMAIAKKK AEDTKKRLEH ELRVEGEKLE KAKKEELEER KRLEALKSKA 540 EIERLEAARK MEEEKEKRKA EEERRVAAEA EAKRVERVRV EEALKMKAEQ EKKAAAECEK 600 VEAARQKQIE EARLEAARKM EEEVRLQAAK KKMAEEEEKR RQEEHEKLEK EKKVNDEARR 660 GRSKDATVER QEKEVEEVTP LMKSSIVLKP GEVACGAPTN KQVMCPYPAK TCPWHIHGDG 720 DDKDDQVHHN RRHLLTSGDI GPSLKGKWIS VLWPDTGEWF DGEILNMNNS TAKLWYPADD 780 LDDATLGERE DINLEEAIEG NEISWPLVAR KPLTLQAKLV DETSSLDILR DYITSCGGKL 840 EGNWSVQVKV RQSGQSALTG HVDHYFFSPE GKKYRSKVEV ARALNVPKLP KSAKKRKVVY 900 NKDDDIGTPP PKNRKETHSQ RLSDKTAAAA AVAAATTAAT PYGYGSPEAS PDYFLQRSFD 960 GENETNLSDS FLTNTTNINT IITDAITNVD EKINQQQGGE YNNRNTTDRD DNASSPLPPL 1020 FKNKSGERME LTVHQNDGWM *

Sequence ? help Back to Top

Protein Sequence Length: 1041 aa Download sequence Send to blast

MSCFLNMVTS SDVIVPRREE QQHQHHHHQY YNGGEYGGGM MTTSVAPRIR VEIANGIRKG  60
EKFITELSGC ERVRDFVSMK LCKNEYLRGK EVKVYLDEYE LLGDTSVDVL GHEDKIFVVV  120
CDDEGDEMEE EEEVDDGFAR VRAELEKREE EKKKEEKKKK KKKTTLNMKK ETNNRGTRIV  180
NQQHERKQKK HNLEHSLRMA PTMVTMKKVQ KKMATVPSKK DERPRLAAQM VYASSSEEDD  240
DDGDSHGLEE LSSDEDGGDP EFFVRNVGVQ KSSRSSRKNG TPNSKEKRAE LPKKKNWQSR  300
LLRNAEKPDW MCRGAGFKWS CTEKKAPGKS VCEKHSRMPK WSKAPVAPPP PPAKKAGKTL  360
EKLENARKAA ASSALTCEKC GKVCKGQGPL TMHVRSCKGS DSSIAASPAA DETKKGGQPP  420
LLRGKRVPIK LLRKCARNGG VKSILAELVV NYRIGARSNV PVTAMVPAQT PVATAIAPIL  480
ASVADADKKL SDLMAIAKKK AEDTKKRLEH ELRVEGEKLE KAKKEELEER KRLEALKSKA  540
EIERLEAARK MEEEKEKRKA EEERRVAAEA EAKRVERVRV EEALKMKAEQ EKKAAAECEK  600
VEAARQKQIE EARLEAARKM EEEVRLQAAK KKMAEEEEKR RQEEHEKLEK EKKVNDEARR  660
GRSKDATVER QEKEVEEVTP LMKSSIVLKP GEVACGAPTN KQVMCPYPAK TCPWHIHGDG  720
DDKDDQVHHN RRHLLTSGDI GPSLKGKWIS VLWPDTGEWF DGEILNMNNS TAKLWYPADD  780
LDDATLGERE DINLEEAIEG NEISWPLVAR KPLTLQAKLV DETSSLDILR DYITSCGGKL  840
EGNWSVQVKV RQSGQSALTG HVDHYFFSPE GKKYRSKVEV ARALNVPKLP KSAKKRKVVY  900
NKDDDIGTPP PKNRKETHSQ RLSDKTAAAA AVAAATTAAT PYGYGSPEAS PDYFLQRSFD  960
GENETNLSDS FLTNTTNINT IITDAITNVD EKINQQQGGE YNNRNTTDRD DNASSPLPPL  1020
FKNKSGERME LTVHQNDGWM *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	156	162	KKKKKKK
2	158	169	KKKKKTTLNMKK

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FO082268	0.0	FO082268.1 Bathycoccus prasinos genomic : Chromosome_11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007510352.1	0.0	predicted protein
TrEMBL	K8EKC4	0.0	K8EKC4_9CHLO; Uncharacterized protein
STRING	XP_007510352.1	0.0	(Bathycoccus prasinos)

Link Out ? help Back to Top
Entrez Gene	19013013