PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bathy11g01860 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
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Family | C2H2 | ||||||||
Protein Properties | Length: 189aa MW: 22638.7 Da PI: 7.8175 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 20.1 | 1.7e-06 | 53 | 75 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C ++++++++Lk+H+r H Bathy11g01860 53 HECDVCEMTCRDSYDLKVHMRIH 75 78*******************99 PP | |||||||
2 | zf-C2H2 | 26.7 | 1.4e-08 | 81 | 103 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C k+Fsr+ nLk+H r H Bathy11g01860 81 YECDVCEKRFSRSGNLKSHKRIH 103 99*******************99 PP | |||||||
3 | zf-C2H2 | 23.2 | 1.8e-07 | 109 | 131 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C+k F+++ L++H r H Bathy11g01860 109 YECDVCDKAFRTSGGLTQHKRIH 131 99*******************99 PP | |||||||
4 | zf-C2H2 | 19 | 3.7e-06 | 137 | 159 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C ++F+++ +L++H+r H Bathy11g01860 137 YECDVCEMRFRHSCSLQTHMRIH 159 99*******************99 PP | |||||||
5 | zf-C2H2 | 21.5 | 6.2e-07 | 165 | 188 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ C k++++ s Lk H+rt H Bathy11g01860 165 FECHVCEKRYRQLSGLKYHMRTqH 188 89********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 4.4E-13 | 52 | 82 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0039 | 53 | 75 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 3.46E-17 | 53 | 103 | No hit | No description |
PROSITE profile | PS50157 | 12.133 | 53 | 80 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 55 | 75 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 3.6E-4 | 81 | 103 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 16.56 | 81 | 108 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF00096 | 5.3E-6 | 81 | 103 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 83 | 103 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 4.9E-18 | 83 | 108 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.01E-22 | 90 | 146 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.0E-17 | 109 | 137 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 3.1E-4 | 109 | 131 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 16.02 | 109 | 136 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF00096 | 2.1E-5 | 109 | 131 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 111 | 131 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.78E-17 | 131 | 183 | No hit | No description |
PROSITE profile | PS50157 | 15.043 | 137 | 164 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0023 | 137 | 159 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12874 | 0.0072 | 137 | 159 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.7E-13 | 138 | 156 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 139 | 159 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 3.5E-13 | 157 | 186 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0077 | 165 | 188 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.99 | 165 | 188 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 0.062 | 165 | 188 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 167 | 188 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MDARDKEEEE KEEEPVLCLR IPDEDDDLEA SQQMRKEETT CIKKGTKRKR TQHECDVCEM 60 TCRDSYDLKV HMRIHTKEKP YECDVCEKRF SRSGNLKSHK RIHTNEKPYE CDVCDKAFRT 120 SGGLTQHKRI HTKEKPYECD VCEMRFRHSC SLQTHMRIHT NEKPFECHVC EKRYRQLSGL 180 KYHMRTQH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2i13_A | 1e-33 | 53 | 186 | 15 | 188 | Aart |
2i13_B | 1e-33 | 53 | 186 | 15 | 188 | Aart |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FO082268 | 0.0 | FO082268.1 Bathycoccus prasinos genomic : Chromosome_11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007510384.1 | 1e-135 | PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein | ||||
Swissprot | Q8NB50 | 3e-40 | ZFP62_HUMAN; Zinc finger protein 62 homolog | ||||
TrEMBL | K8EL71 | 1e-134 | K8EL71_9CHLO; PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein) | ||||
STRING | XP_007510384.1 | 1e-135 | (Bathycoccus prasinos) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP70 | 6 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04240.1 | 2e-10 | C2H2 family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 19012866 |