PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy11g01700
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family C2H2
Protein Properties Length: 273aa    MW: 32579.4 Da    PI: 9.6508
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy11g01700genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2254.9e-08192214123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C  C k+F+r ++Lk+H+r H
  Bathy11g01700 192 HECDVCEKRFTRADSLKTHMRIH 214
                    78*******************99 PP
2zf-C2H226.12.1e-08220242123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C k+F+r+s Lk H+r H
  Bathy11g01700 220 YECDVCEKRFTRSSGLKLHMRIH 242
                    99*******************99 PP
3zf-C2H223.71.2e-07248271123
                    EEETTTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                    y+C  C k+F+r+ +LkrH rt H
  Bathy11g01700 248 YECDVCEKRFTRSGSLKRHKRTqH 271
                    99********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.17E-11191223No hitNo description
Gene3DG3DSA:3.30.160.601.9E-14192214IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF000961.1E-5192214IPR007087Zinc finger, C2H2
PROSITE profilePS5015715.604192219IPR007087Zinc finger, C2H2
SMARTSM003551.2E-4192214IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280194214IPR007087Zinc finger, C2H2
SuperFamilySSF576675.97E-21214266No hitNo description
Gene3DG3DSA:3.30.160.601.6E-18215239IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015716.373220247IPR007087Zinc finger, C2H2
PfamPF000962.9E-6220242IPR007087Zinc finger, C2H2
SMARTSM003551.2E-4220242IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280222242IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.1E-15240269IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF138942.1E-4248271No hitNo description
PROSITE profilePS5015712.695248272IPR007087Zinc finger, C2H2
SMARTSM003552.1E-4248271IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280250272IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MREYWRSFLL KFPFSIAIWN GEEEEEKEEE NPTLKRSTTT IPVRIVFRGR GEDQKTVRVK  60
ALTREDFMVK FVTTFPPTKQ LSQKKRKFLL LHEKDLTCDF ILLLLIILNA QQEEHILMSR  120
RKNPHPKRAV NARTVFKVVK GRREEEEVEE EEPLVLCSRI PDEDDDLEAS QQIQKEETTF  180
IKKGTKRKRA QHECDVCEKR FTRADSLKTH MRIHTNERPY ECDVCEKRFT RSSGLKLHMR  240
IHTNERPYEC DVCEKRFTRS GSLKRHKRTQ HH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mey_C4e-20192269582CONSENSUS ZINC FINGER
1mey_F4e-20192269582CONSENSUS ZINC FINGER
1mey_G4e-20192269582CONSENSUS ZINC FINGER
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822680.0FO082268.1 Bathycoccus prasinos genomic : Chromosome_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007510116.10.0PREDICTED: zinc finger protein 347-like
TrEMBLK8EKB80.0K8EKB8_9CHLO; PREDICTED: zinc finger protein 347-like
STRINGXP_007510116.10.0(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP70653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.13e-10C2H2 family protein